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Report for CCDS15883.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15883.1 Public Mus musculus 2 Ptpa 23 108 98 CCDS HistoryNCBI Gene:110854Re-query CCDS DB by CCDS ID:15883.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15883.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042055.9 ENSMUSP00000046837.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042055.9Link to Ensembl Protein Viewer:ENSMUSP00000046837.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000042055Re-query CCDS DB by Protein ID:ENSMUSP00000046837
Original member Current member NCBI NM_138748.5 NP_620087.3 Accepted alive Link to Nucleotide Sequence:NM_138748.5Link to Protein Sequence:NP_620087.3Re-query CCDS DB by Nucleotide ID:NM_138748Re-query CCDS DB by Protein ID:NP_620087Link to BLAST:NP_620087.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620087.3 323 P58389 323 100% 0 0

Chromosomal Locations for CCDS 15883.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30416302 30416332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30426399 30426496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30428316 30428402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30431961 30432086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30435564 30435681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30437570 30437669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30438229 30438353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30439664 30439764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30443290 30443397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30446377 30446454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGGCCGAGGGCGAGCGGCAGCCGCCGCCAGATTCTTCAGAAGAGACCCCTCCAACTACTCAGAACTTTA
TCATTCCAAAAAAGGAGATCCACACAGTTCCAGATATGGGCAAATGGAAGCGCTCTCAGGCATATGCTGA
CTACATTGGCTTCATCCTTACCCTCAATGAAGGTGTGAAGGGGAAGAAGCTGACCTTCGACTACAAAGTC
TCTGAGGCCATCGAGAAGCTGGTGGCACTTCTTGATACGCTGGATAGGTGGATTGATGAAACCCCGCCAG
TGGACCAGCCTTCCCGGTTTGGGAACAAAGCCTACAGAACCTGGTATGCCAAACTTGATCAGGAAGCAGA
AAACTTGGTGGCCACAGTGGTCCCCACCCACCTGGCTGCTGCTGTGCCTGAAGTGGCAGTTTACCTGAAG
GAGGCTGTGGGGAACTCCACACGAATTGACTATGGCACAGGGCATGAGGCTGCCTTTGCTGCTTTCCTCT
GTTGTCTCTGCAAGATTGGTGTACTCCGGGTGGACGACCAGGTGGCTATTGTCTTCAAGGTGTTTGATAG
GTATCTTGAGGTTATGCGGAAGTTGCAGAAGACATACAGGATGGAGCCTGCAGGCAGCCAGGGCGTATGG
GGTCTGGATGACTTCCAGTTCCTGCCCTTCATCTGGGGCAGCTCACAGCTCATAGACCACCCCCACCTGG
AGCCCAGACATTTCGTGGATGAGAAGGCGGTGAGCGAGAACCACAAGGACTACATGTTTCTCCAGTGCAT
CCTGTTCATCACTGAGATGAAGACTGGCCCCTTTGCGGAACACTCCAACCAGCTGTGGAACATCAGTGCT
GTCCCCTCCTGGTCTAAAGTGAACCAGGGCCTCATTCGAATGTATAAGGCAGAGTGCCTGGAGAAGTTCC
CTGTGATCCAGCACTTCAAGTTCGGGAGCCTGCTGCCCATCCATCCCGTCACATCAGGCTAG

Translation (323 aa):
MAEGERQPPPDSSEETPPTTQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFDYKV
SEAIEKLVALLDTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDQEAENLVATVVPTHLAAAVPEVAVYLK
EAVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQVAIVFKVFDRYLEVMRKLQKTYRMEPAGSQGVW
GLDDFQFLPFIWGSSQLIDHPHLEPRHFVDEKAVSENHKDYMFLQCILFITEMKTGPFAEHSNQLWNISA
VPSWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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