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Report for CCDS9884.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9884.1 Public Homo sapiens 14 PTPN21 24 110 108 CCDS HistoryNCBI Gene:11099Re-query CCDS DB by CCDS ID:9884.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9884.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328736.7 ENSP00000330276.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000328736.7Link to Ensembl Protein Viewer:ENSP00000330276.3Re-query CCDS DB by Nucleotide ID:ENST00000328736Re-query CCDS DB by Protein ID:ENSP00000330276
Original member Current member EBI ENST00000556564.6 ENSP00000452414.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000556564.6Link to Ensembl Protein Viewer:ENSP00000452414.1Re-query CCDS DB by Nucleotide ID:ENST00000556564Re-query CCDS DB by Protein ID:ENSP00000452414
Original member Current member NCBI NM_007039.4 NP_008970.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007039.4Link to Protein Sequence:NP_008970.2Re-query CCDS DB by Nucleotide ID:NM_007039Re-query CCDS DB by Protein ID:NP_008970Link to BLAST:NP_008970.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008970.2 1174 Q16825 1174 100% 0 0

Chromosomal Locations for CCDS 9884.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 88468137 88468265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88468916 88469076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88469499 88469733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88469922 88470050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88472244 88472465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88473665 88473802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88478920 88480352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88485076 88485160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88485782 88485842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88496413 88496492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88497203 88497290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88500783 88500871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88501281 88501368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88504425 88504495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88505304 88505371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88507923 88508020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88517092 88517261 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 88550238 88550417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3525 nt):
ATGCCACTGCCATTTGGGTTGAAACTGAAACGCACCCGGCGCTACACGGTGTCCAGCAAGAGTTGCCTGG
TTGCCCGGATCCAACTGCTTAATAACGAGTTTGTGGAGTTCACCCTGTCCGTGGAGAGCACTGGCCAGGA
AAGCCTCGAGGCCGTGGCCCAGAGGCTGGAGCTGCGGGAGGTCACTTACTTCAGCCTCTGGTACTACAAC
AAGCAAAATCAGCGCCGGTGGGTAGATTTGGAAAAACCTTTGAAGAAGCAGCTGGATAAATATGCATTGG
AACCTACCGTCTATTTTGGAGTGGTGTTTTATGTGCCTTCAGTTTCTCAGCTGCAGCAGGAGATTACCAG
GTATCAGTATTATCTGCAACTGAAGAAAGATATCTTGGAAGGAAGTATTCCTTGTACCTTAGAACAAGCA
ATTCAGCTAGCAGGCTTAGCTGTTCAAGCGGATTTTGGTGACTTTGATCAGTATGAATCCCAGGACTTTC
TTCAGAAATTTGCCTTGTTTCCTGTGGGATGGTTACAAGATGAAAAAGTATTGGAAGAAGCAACCCAAAA
AGTGGCCTTACTACATCAGAAATACAGAGGGCTCACAGCTCCTGATGCTGAAATGCTGTACATGCAGGAG
GTAGAGAGAATGGATGGCTATGGAGAAGAGAGCTACCCTGCTAAGGATAGCCAAGGAAGTGACATATCCA
TTGGAGCGTGTCTTGAAGGTATCTTTGTGAAACACAAGAATGGAAGGCATCCTGTGGTATTTAGGTGGCA
TGACATTGCCAACATGTCCCACAACAAGTCCTTTTTTGCATTAGAGCTGGCAAATAAAGAGGAGACCATT
CAATTTCAAACTGAAGACATGGAAACAGCAAAATACATTTGGAGACTCTGTGTTGCGCGACACAAGTTTT
ACAGACTAAACCAGTGTAACCTGCAAACTCAGACTGTCACAGTGAACCCAATCAGGAGGAGGTCTTCTTC
AAGGATGTCTCTGCCTAAACCCCAGCCCTACGTGATGCCTCCCCCACCGCAGTTGCACTATAATGGACAT
TATACAGAACCATATGCTTCTTCCCAAGATAACCTCTTTGTGCCCAACCAGAACGGATACTACTGTCACT
CTCAGACAAGCTTGGATAGAGCCCAGATTGACCTCAACGGTCGGATCCGTAATGGCAGTGTCTACAGTGC
ACACAGCACCAACTCCTTAAATAATCCTCAGCCCTACTTGCAGCCCTCGCCGATGTCGTCCAACCCTAGC
ATCACCGGGAGTGACGTCATGAGGCCTGACTACCTCCCGTCCCATCGGCACAGCGCCGTGATACCCCCGT
CCTACCGCCCCACCCCAGACTATGAGACTGTGATGAAGCAGCTCAACAGGGGCCTGGTGCATGCGGAACG
GCAGAGCCACTCGCTGCGAAACCTCAACATCGGCAGCTCGTACGCCTACAGCAGGCCCGCGGCGCTGGTC
TACAGCCAGCCCGAGATCCGCGAGCACGCACAGCTCCCCTCGCCAGCGGCCGCACACTGCCCGTTCAGCC
TGAGCTACAGCTTCCACAGCCCGTCTCCCTACCCCTACCCTGCCGAGCGGCGGCCCGTGGTGGGCGCGGT
CAGCGTGCCGGAGCTGACCAATGCGCAGCTGCAGGCGCAGGACTACCCGTCTCCCAACATCATGCGGACG
CAGGTGTACCGGCCACCCCCACCCTACCCGCCCCCCAGGCCCGCCAACAGCACGCCAGACCTGTCCCGCC
ACCTTTACATCAGCAGCAGCAACCCCGACCTCATCACGCGGCGCGTGCACCACTCGGTGCAAACGTTCCA
GGAGGACAGCCTGCCCGTGGCGCACTCGCTGCAGGAGGTCAGCGAGCCCCTCACCGCCGCGCGCCACGCG
CAGCTGCACAAACGGAACAGCATCGAGGTGGCCGGGCTCAGCCACGGCCTGGAGGGCCTGCGGCTCAAGG
AGCGCACCCTATCCGCGTCGGCGGCAGAGGTGGCGCCGCGAGCCGTCTCGGTGGGCTCCCAGCCCAGCGT
TTTCACCGAGAGGACACAGCGAGAAGGGCCGGAGGAGGCGGAGGGCTTGAGGTACGGCCATAAGAAGTCC
CTGTCGGACGCCACCATGCTAATCCACAGCAGCGAGGAGGAGGAGGACGAGGACTTCGAGGAGGAGAGCG
GGGCCCGGGCGCCTCCTGCACGTGCGCGCGAGCCTCGGCCCGGCCTGGCCCAGGACCCACCTGGCTGCCC
TCGCGTCCTGCTCGCCGGGCCCCTGCACATCCTGGAGCCCAAGGCCCACGTCCCAGACGCGGAGAAGAGG
ATGATGGACAGCAGCCCCGTCCGCACGACCGCAGAGGCCCAGCGGCCCTGGAGAGACGGGCTGCTGATGC
CCTCCATGTCGGAGTCCGACCTCACCACGTCAGGCCGCTACCGAGCCCGGAGGGACTCTCTGAAGAAAAG
GCCGGTGTCGGACCTTCTCTCTGGGAAGAAGAACATCGTGGAAGGGCTCCCGCCTCTAGGGGGAATGAAA
AAGACTCGAGTAGATGCAAAAAAAATTGGTCCTCTTAAACTGGCTGCCCTAAATGGACTCTCCCTATCTC
GAGTGCCTCTGCCTGATGAAGGAAAGGAAGTGGCTACCAGAGCAACGAATGATGAAAGGTGTAAAATTCT
GGAACAACGATTAGAACAAGGAATGGTATTCACAGAATATGAAAGAATTCTTAAGAAACGGCTAGTTGAT
GGGGAGTGCTCAACAGCACGACTCCCTGAAAATGCAGAAAGAAATCGATTCCAAGATGTTCTTCCTTATG
ATGATGTGAGAGTGGAGTTGGTCCCAACTAAAGAAAACAACACTGGTTACATCAACGCATCACATATTAA
GGTCTCTGTCAGTGGAATCGAATGGGATTATATTGCCACACAGGGACCATTACAGAATACCTGTCAAGAT
TTTTGGCAGATGGTATGGGAACAGGGAATTGCAATTATAGCAATGGTGACAGCAGAAGAGGAGGGTGGAA
GGGAGAAGAGCTTTAGGTACTGGCCACGACTTGGTTCCAGGCACAACACTGTCACCTATGGAAGGTTTAA
GATCACGACCCGGTTCCGCACAGACTCTGGCTGCTATGCCACCACAGGCCTGAAGATGAAGCACCTCCTT
ACTGGGCAAGAGAGGACCGTCTGGCACCTCCAATACACAGACTGGCCTGAACATGGCTGTCCAGAAGACC
TCAAGGGATTTTTATCATATCTTGAAGAGATCCAGTCTGTTCGACGCCATACAAATAGCACAAGTGATCC
CCAAAGCCCCAACCCTCCGTTGTTGGTCCACTGCAGTGCTGGGGTAGGAAGGACTGGCGTGGTGATTTTG
TCGGAGATCATGATCGCCTGCCTGGAACACAATGAGGTGCTGGACATCCCGAGAGTGCTGGACATGCTGA
GGCAACAGAGAATGATGCTGGTGCAGACTCTCTGCCAGTACACATTTGTGTACAGAGTCCTCATCCAGTT
CCTGAAAAGCTCCAGGCTCATCTAA

Translation (1174 aa):
MPLPFGLKLKRTRRYTVSSKSCLVARIQLLNNEFVEFTLSVESTGQESLEAVAQRLELREVTYFSLWYYN
KQNQRRWVDLEKPLKKQLDKYALEPTVYFGVVFYVPSVSQLQQEITRYQYYLQLKKDILEGSIPCTLEQA
IQLAGLAVQADFGDFDQYESQDFLQKFALFPVGWLQDEKVLEEATQKVALLHQKYRGLTAPDAEMLYMQE
VERMDGYGEESYPAKDSQGSDISIGACLEGIFVKHKNGRHPVVFRWHDIANMSHNKSFFALELANKEETI
QFQTEDMETAKYIWRLCVARHKFYRLNQCNLQTQTVTVNPIRRRSSSRMSLPKPQPYVMPPPPQLHYNGH
YTEPYASSQDNLFVPNQNGYYCHSQTSLDRAQIDLNGRIRNGSVYSAHSTNSLNNPQPYLQPSPMSSNPS
ITGSDVMRPDYLPSHRHSAVIPPSYRPTPDYETVMKQLNRGLVHAERQSHSLRNLNIGSSYAYSRPAALV
YSQPEIREHAQLPSPAAAHCPFSLSYSFHSPSPYPYPAERRPVVGAVSVPELTNAQLQAQDYPSPNIMRT
QVYRPPPPYPPPRPANSTPDLSRHLYISSSNPDLITRRVHHSVQTFQEDSLPVAHSLQEVSEPLTAARHA
QLHKRNSIEVAGLSHGLEGLRLKERTLSASAAEVAPRAVSVGSQPSVFTERTQREGPEEAEGLRYGHKKS
LSDATMLIHSSEEEEDEDFEEESGARAPPARAREPRPGLAQDPPGCPRVLLAGPLHILEPKAHVPDAEKR
MMDSSPVRTTAEAQRPWRDGLLMPSMSESDLTTSGRYRARRDSLKKRPVSDLLSGKKNIVEGLPPLGGMK
KTRVDAKKIGPLKLAALNGLSLSRVPLPDEGKEVATRATNDERCKILEQRLEQGMVFTEYERILKKRLVD
GECSTARLPENAERNRFQDVLPYDDVRVELVPTKENNTGYINASHIKVSVSGIEWDYIATQGPLQNTCQD
FWQMVWEQGIAIIAMVTAEEEGGREKSFRYWPRLGSRHNTVTYGRFKITTRFRTDSGCYATTGLKMKHLL
TGQERTVWHLQYTDWPEHGCPEDLKGFLSYLEEIQSVRRHTNSTSDPQSPNPPLLVHCSAGVGRTGVVIL
SEIMIACLEHNEVLDIPRVLDMLRQQRMMLVQTLCQYTFVYRVLIQFLKSSRLI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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