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Report for CCDS46285.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46285.1 Public Homo sapiens 2 CIMIP6 24 110 108 CCDS HistoryNCBI Gene:129852Re-query CCDS DB by CCDS ID:46285.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46285.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398634.7 ENSP00000381631.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000398634.7Link to Ensembl Protein Viewer:ENSP00000381631.2Re-query CCDS DB by Nucleotide ID:ENST00000398634Re-query CCDS DB by Protein ID:ENSP00000381631
Original member Current member NCBI NM_001100396.2 NP_001093866.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100396.2Link to Protein Sequence:NP_001093866.1Re-query CCDS DB by Nucleotide ID:NM_001100396Re-query CCDS DB by Protein ID:NP_001093866Link to BLAST:NP_001093866.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093866.1 287 Q8N5S3-1 287 100% 0 0

Chromosomal Locations for CCDS 46285.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 54330976 54331001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54334817 54335024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54343720 54343873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54358959 54359074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 54360203 54360562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGAGGAAAAGGAAGATAAGCATCAACAGCATAAAATAGAGGATGCTGCTATAACATATGTAAGTGAAA
ATGAAGAAATTAAACACGAAGAAAAACCTGGAAAAAGCATACATCATTCAAAATCACATGTTGGAAGAGG
ACGTATATATTATGCTAAATTCATTAACACAAATGCAAGAACATACAATGAACCATTTCCCTACATAGAT
CCCAAAAAAGGGCCAGAAATACAGGGTGACTGGTGGTCACATGGTAAAGCACTGGAACCTGTCTTCCTAC
CACCTTACGACTCTAAGAGCACCCAGAGGAGTGACTTCCAAAAACCATCGTGTCCACTGGTTTTGCCAGT
CAAACACAGCAAGATGCAAAAGCCTTCTTGTGGAATAGTACCACTTGCCTCTCCTGGTACATCAGCAGAA
CTTCAAAACAATTTTATAGAATACATCTCTTTTATACATCAATATGATGCCAGAAAAACTCCGAATGAGC
CTCTCCAGGGAAAGAGACACGGAGCTTTTGTACAGAGAGAGATAAAACCAGGCAGTAGGCCAACAGTTCC
TAAAGGAGCAGAGGTATTACTGAACACTCCAGGGTCACGTTCATCAGAACAGTCCAAAAAAACAGAGAAA
GGAAACTCAGCGGAAAGCAGAATGATCTCACCAGGTCTCTGCCAACAAAATTCTCAGGAGCTGTTAGAGC
CTAAAACTCACTTATCAGAAACAGACGTCAGACAGGCAGCCAAGGCATGCCCCAGCACTCCTGAGAGCAG
AGAAAAGACCTCAGGCGCCACTCAAACAACTGTAGGAGATGCTCTTTTCACTAGGCACAAGCCTTTAAAT
CCACCAATTAAAAAATCAGAATAA

Translation (287 aa):
MEEKEDKHQQHKIEDAAITYVSENEEIKHEEKPGKSIHHSKSHVGRGRIYYAKFINTNARTYNEPFPYID
PKKGPEIQGDWWSHGKALEPVFLPPYDSKSTQRSDFQKPSCPLVLPVKHSKMQKPSCGIVPLASPGTSAE
LQNNFIEYISFIHQYDARKTPNEPLQGKRHGAFVQREIKPGSRPTVPKGAEVLLNTPGSRSSEQSKKTEK
GNSAESRMISPGLCQQNSQELLEPKTHLSETDVRQAAKACPSTPESREKTSGATQTTVGDALFTRHKPLN
PPIKKSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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