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Report for CCDS44310.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44310.1 Public Homo sapiens 1 CR1L 24 110 108 CCDS HistoryNCBI Gene:1379Re-query CCDS DB by CCDS ID:44310.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44310.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000508064.7 ENSP00000421736.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000508064.7Link to Ensembl Protein Viewer:ENSP00000421736.2Re-query CCDS DB by Nucleotide ID:ENST00000508064Re-query CCDS DB by Protein ID:ENSP00000421736
Original member Current member NCBI NM_175710.2 NP_783641.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175710.2Link to Protein Sequence:NP_783641.1Re-query CCDS DB by Nucleotide ID:NM_175710Re-query CCDS DB by Protein ID:NP_783641Link to BLAST:NP_783641.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_783641.1 569 Q2VPA4-1 569 100% 0 0

Chromosomal Locations for CCDS 44310.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 207645234 207645330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207677389 207677568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207678198 207678297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207683872 207683957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207694353 207694751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207697503 207697679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207697771 207697873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207699189 207699274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207701519 207701618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207708178 207708263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207717464 207717691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 207723618 207723685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1710 nt):
ATGGCGCCTCCCGTCCGTCTCGAGCGTCCCTTTCCTTCCCGGCGCTTTCCTGGGTTGCTTCTGGCGGCCC
TGGTGTTGCTGCTGTCCTCCTTCTCCGATCAATGCAATGTCCCGGAATGGCTTCCATTTGCCAGGCCTAC
CAACCTAACTGATGACTTTGAGTTTCCCATTGGGACATATCTGAACTATGAATGCCGCCCTGGTTATTCC
GGAAGACCGTTTTCTATCATCTGCCTAAAAAACTCAGTCTGGACAAGTGCTAAGGACAAGTGCAAACGTA
AATCATGTCGTAATCCTCCAGATCCTGTGAATGGCATGGCACATGTGATCAAAGACATCCAGTTCAGATC
CCAAATTAAATATTCTTGTCCTAAAGGATACCGACTCATTGGTTCCTCGTCTGCCACATGCATCATCTCA
GGCAACACTGTCATTTGGGATAATAAAACACCTGTTTGTGACAGAATTATTTGTGGGCTACCCCCCACCA
TCGCCAATGGAGATTTCACTAGCATCAGCAGAGAGTATTTTCACTATGGATCAGTGGTGACCTACCACTG
CAATCTTGGAAGCAGAGGGAAAAAGGTGTTTGAGCTTGTGGGTGAGCCCTCCATATACTGCACCAGCAAA
GATGATCAAGTGGGCATCTGGAGTGGCCCAGCCCCTCAGTGCATTATACCTAACAAATGCACGCCTCCAA
ATGTGGAAAATGGAATATTGGTATCTGACAACAGAAGCTTATTTTCCTTAAATGAAGTTGTGGAGTTTAG
GTGTCAGCCTGGCTTTGGCATGAAAGGGCCCTCCCATGTGAAGTGCCAGGCCCTGAACAAATGGGAGCCA
GAGTTACCAAGCTGCTCCAGGGTATGTCAGCCACCTCCAGATGTCCTGCATGCTGAGCGTACCCAAAGGG
ACAAGGACAACTTTTCACCCGGGCAGGAAGTGTTCTACAGCTGTGAGCCCGGCTACGACCTCAGAGGATC
TACGTATTTGCACTGCACACCCCAGGGAGACTGGAGCCCTGCAGCCCCCAGATGTGAAGTGAAATCCTGT
GATGACTTCCTGGGCCAACTTCCTAATGGCCATGTGCTATTTCCACTTAATCTCCAGCTTGGAGCAAAAG
TGGATTTTGTTTGTGATGAAGGATTTCAATTAAAAGGCAGCTCTGCTAGTTACTGTGTTTTGGCTGGAAT
GGAAAGCCTTTGGAATAGCAGTGTTCCAGTGTGTGAACGTAAATCATGTGAAACTCCTCCAGTTCCAGTG
AATGGCATGGTGCATGTGATCACAGACATCCATGTTGGATCCAGAATCAACTATTCTTGTACTACAGGGC
ACCGACTCATTGGTCACTCATCTGCTGAATGTATCCTCTCGGGCAATACTGCCCATTGGAGCATGAAGCC
ACCAATTTGTCAACAAATCTTTTGTCCAAATCCTCCAGCTATCCTTAATGGGAGACACACAGGAACTCCC
CTTGGAGATATTCCCTATGGAAAAGAAGTATCTTACACATGTGACCCCCACCCAGACAGAGGGATGACCT
TCAACCTCATTGGGGAGAGCACCATCCGCCGCACAAGTGAACCTCATGGGAATGGGGTTTGGAGCAGCCC
TGCCCCTCGCTGTGAACTTCCTGTTGGTGCTGGTTCACATGATGCTCTTATAGTTGGTAAGTTTTATGAA
GTGTTTGCTGAGGAATTCTGTCATCTTTAA

Translation (569 aa):
MAPPVRLERPFPSRRFPGLLLAALVLLLSSFSDQCNVPEWLPFARPTNLTDDFEFPIGTYLNYECRPGYS
GRPFSIICLKNSVWTSAKDKCKRKSCRNPPDPVNGMAHVIKDIQFRSQIKYSCPKGYRLIGSSSATCIIS
GNTVIWDNKTPVCDRIICGLPPTIANGDFTSISREYFHYGSVVTYHCNLGSRGKKVFELVGEPSIYCTSK
DDQVGIWSGPAPQCIIPNKCTPPNVENGILVSDNRSLFSLNEVVEFRCQPGFGMKGPSHVKCQALNKWEP
ELPSCSRVCQPPPDVLHAERTQRDKDNFSPGQEVFYSCEPGYDLRGSTYLHCTPQGDWSPAAPRCEVKSC
DDFLGQLPNGHVLFPLNLQLGAKVDFVCDEGFQLKGSSASYCVLAGMESLWNSSVPVCERKSCETPPVPV
NGMVHVITDIHVGSRINYSCTTGHRLIGHSSAECILSGNTAHWSMKPPICQQIFCPNPPAILNGRHTGTP
LGDIPYGKEVSYTCDPHPDRGMTFNLIGESTIRRTSEPHGNGVWSSPAPRCELPVGAGSHDALIVGKFYE
VFAEEFCHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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