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Report for CCDS35003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35003.1 Public Homo sapiens 9 TAF1L 24 110 108 CCDS HistoryNCBI Gene:138474Re-query CCDS DB by CCDS ID:35003.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000242310.4 ENSP00000418379.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000242310.4Link to Ensembl Protein Viewer:ENSP00000418379.1Re-query CCDS DB by Nucleotide ID:ENST00000242310Re-query CCDS DB by Protein ID:ENSP00000418379
Original member Current member NCBI NM_153809.2 NP_722516.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153809.2Link to Protein Sequence:NP_722516.1Re-query CCDS DB by Nucleotide ID:NM_153809Re-query CCDS DB by Protein ID:NP_722516Link to BLAST:NP_722516.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_722516.1 1826 Q8IZX4 1826 100% 0 0

Chromosomal Locations for CCDS 35003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 32630099 32635579 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5481 nt):
ATGCGACCCGGCTGCGATTTGCTGCTGAGGGCAGCAGCTACCGTCACTGCCGCCATCATGTCAGACTCGG
AC
AGCGAGGAAGATTCATCTGGAGGTGGCCCATTTACTTTAGCGGGTATCCTTTTCGGCAACATCAGTGG
A
GCGGGGCAGCTGGAGGGGGAAAGCGTCTTGGATGATGAGTGTAAGAAGCACTTGGCAGGCTTGGGGGCT
TTG
GGGCTGGGCAGCCTAATCACTGAACTCACGGCAAATGAAGAATTGACTGGGACTGGCGGTGCCTTGG
TA
AATGATGAAGGGTGGATTAGGAGTACAGAAGATGCTGTAGACTATTCAGACATCAATGAGGTGGCAGA
A
GATGAAAGCCAAAGACACCAGCAGACGATGGGGAGCTTGCAGCCCCTTTACCACTCGGATTATGATGAA
GAT
GACTATGATGCTGATTGTGAAGACATTGATTGCAAGTTGATGCCTCCTCCACCTCCACCCCCGGGAC
CA
ATGAAGAAGGATAAGGACCAAGATGCTATTACCTGTGTGTCTGAAAGTGGAGAAGACATCATCTTGCC
C
TCCATCATTGCCCCTTCCTTTTTGGCCTCAGAGAAAGTGGATTTCAGTAGTTACTCTGATTCAGAATCT
GAG
ATGGGACCTCAGGAAGCAACACAGGCAGAATCTGAGGATGGAAAGCTGACCCTTCCATTGGCTGGGA
TT
ATGCAGCATGATGCCACCAAGCTGTTGCCAAGTGTCACCGAACTTTTTCCAGAATTTCGACCTGGAAA
A
GTGTTACGCTTCCTACATCTTTTTGGACCAGGGAAGAATGTCCCATCTGTTTGGCGGAGTGCTCGGAGA
AAG
AGGAAGAAGCATCGTGAGCTGATACAGGAAGAGCAGATCCAGGAGGTGGAATGCTCAGTAGAATCAG
AA
GTCAGCCAGAAGTCTTTGTGGAACTATGACTATGCTCCACCACCACCCCCAGAGCAGTGTCTCGCTGA
T
GATGAAATCACGATGATGGTTCCTGTGGAGTCCAAATTTTCCCAATCAACTGGAGATGTAGATAAAGTG
ACA
GATACCAAACCAAGAGTGGCTGAGTGGCGTTATGGGCCTGCCCGACTGTGGTATGATATGCTGGGTG
TC
TCCGAAGATGGCAGTGGGTTTGACTATGGCTTCAAACTGAGAAAGACACAACATGAACCTGTGATAAA
A
TCTAGAATGATGGAGGAATTTAGGAAACTTGAGGAAAGCAATGGCACTGATCTTCTGGCTGACGAAAAC
TTC
CTGATGGTGACACAGCTGCATTGGGAGGATTCTATCATCTGGGATGGGGAGGATATCAAACACAAAG
GG
ACAAAACCTCAGGGTGCAAGCCTGGCAGGCTGGCTTCCTTCTATTAAGACTAGGAATGTAATGGCTTA
C
AATGTTCAGCAAGGTTTTGCACCCACTCTGGATGATGACAAACCTTGGTACTCCATTTTTCCCATTGAC
AAT
GAGGATCTGGTGTATGGACGCTGGGAGGACAATATCATTTGGGATGCTCAGGCCATGCCCCGGCTGT
TG
GAACCTCCTGTTTTGGCACTTGATCCCAATGATGAGAACCTCATTTTGGAAATTCCTGATGAGAAGGA
A
GAGGCCACCTCTAACTCCCCCTCCAAGGAGAGTAAGAAGGAATCATCTCTGAAGAAGAGTCGAATTCTC
TTG
GGCAAAACAGGTGTCATCAGGGAGGAACCACAGCAGAACATGTCTCAGCCAGAAGTGAAAGATCCAT
GG
AATCTCTCCAATGATGAGTATTATTTCCCCAAGCAACAGGGTCTTCGGGGCACCTTTGGAGGGAATAT
T
ATCCAGCATTCAATTCCTGCTATGGAATTATGGCAGCCCTTCTTTCCCACCCACATGGGGCCCATCAAA
ATC
CGGCAGTTCCATCGCCCACCTCTGAAAAAGTACTCATTTGGTGCACTCTCTCAGCCAGGTCCCCATT
CA
GTCCAACCTTTGCTAAAGCACATCAAAAAAAAGGCCAAGATGAGAGAACAAGAGAGGCAAGCCTCAGG
T
GGTGGAGAGTTGTTTTTTATGCGCACACCTCAGGATCTCACAGGCAAAGATGGAGATCTTATTCTTGCA
GAA
TATAGTGAGGAAAATGGACCCTTAATGATGCAGGTTGGCATGGCAACCAAGATAAAGAACTATTATA
AA
CGGAAACCTGGCAAAGATCCTGGAGCACCAGATTGTAAATATGGGGAAACTGTTTACTGCCATACATC
T
CCTTTCTTGGGCTCTCTCCATCCTGGCCAATTACTGCAGGCACTTGAGAACAACCTTTTTCGTGCTCCA
GTG
TATCTTCATAAGATGCCAGAAACTGATTTTCTGATCATTCGGACAAGACAGGGTTACTATATTCGGG
AA
TTAGTGGATATTTTTGTGGTTGGCCAGCAGTGTCCCTTGTTTGAAGTTCCTGGGCCTAACTCCAGAAG
G
GCCAATATGCATATTCGAGACTTTCTACAGGTTTTTATTTACCGCCTTTTCTGGAAGAGTAAAGATCGG
CCA
CGGAGGATACGAATGGAAGATATAAAAAAAGCCTTTCCTTCCCATTCAGAAAGCAGCATCCGGAAGA
GG
CTAAAGCTCTGCGCTGACTTCAAACGCACAGGGATGGATTCAAACTGGTGGGTGCTTAAGTCTGATTT
T
CGTTTACCAACGGAAGAAGAGATCAGAGCTAAGGTGTCACCAGAGCAGTGCTGTGCTTATTATAGCATG
ATA
GCTGCAAAGCAACGACTGAAGGATGCTGGCTATGGTGAGAAATCCTTTTTTGCCCCAGAAGAAGAAA
AT
GAGGAAGATTTCCAGATGAAGATTGATGATGAAGTTCACGCTGCTCCTTGGAACACCACAAGGGCCTT
C
ATTGCTGCCATGAAGGGCAAGTGTCTCCTAGAGGTGACTGGGGTGGCAGATCCCACAGGGTGTGGTGAA
GGA
TTCTCCTATGTGAAGATTCCAAATAAACCAACACAGCAGAAGGATGATAAAGAGCCACAGGCAGTGA
AG
AAGACAGTGACAGGAACAGATGCAGACCTTCGTCGCCTTTCCCTGAAAAATGCCAAGCAACTTCTACG
T
AAATTTGGTGTGCCTGAGGAAGAGATTAAAAAGTTGTCCCGCTGGGAAGTGATTGATGTGGTGCGCACA
ATG
TCAACAGAACAGGCTCATTCTGGAGAGGGGCCCATGAGTAAATTTGCCCGTGGATCAAGGTTTTCTG
TG
GCTGAGCATCAAGAGCGTTACAAAGAGGAATGTCAGCGTATCTTTGACCTACAGAACAAGGTTCTGTC
A
TCAACTGAGGTCTTATCAACTGACACAGACAGCATCTCAGCTGAAGATAGTGACTTTGAAGAAATGGGA
AAG
AACATTGAGAACATGTTGCAGAACAAGAAAACCAGCTCTCAGCTGTCACGTGAATGGGAGGAGCAGG
AG
CGGAAGGAACTACGGCGAATGCTACTGGTAGCAGGCTCAGCAGCATCAGGAAACAATCACAGAGATGA
T
GTCACAGCTTCCATGACTAGCCTTAAGTCTTCTGCCACTGGACACTGTCTCAAGATTTATCGCACATTT
CGA
GATGAAGAGGGGAAAGAGTATGTTCGCTGTGAGACAGTCCGAAAACCAGCTGTCATTGATGCCTATG
TG
CGCATACGGACTACAAAAGATGAGAAATTCATTCAAAAATTTGCCCTTTTTGATGAAAAACATCGGGA
A
GAGATGCGGAAAGAACGGCGGAGGATTCAAGAGCAACTGAGGCGGCTTAAGCGGAACCAGGAAAAGGAG
AAG
CTTAAGGGTCCTCCTGAGAAGAAGCCCAAGAAAATGAAAGAGCGTCCTGACCTAAAACTGAAATGTG
GG
GCATGTGGTGCCATTGGACATATGAGGACTAACAAATTCTGCCCCCTCTATTATCAAACAAATGTGCC
A
CCTTCGAAACCTGTTGCCATGACAGAAGAGCAGGAGGAGGAGTTGGAAAAGACAGTCATTCATAATGAT
AAT
GAAGAACTTATCAAGGTTGAAGGGACCAAAATTGTCTTCGGGAAACAGCTAATTGAGAATGTGCATG
AG
GTTCGCAGAAAATCTCTGGTTCTCAAGTTTCCTAAACAGCAGCTTCCTCCAAAGAAGAAACGGCGAGT
T
GGAACCACTGTTCATTGTGACTATTTGAATATACCTCATAAGTCCATCCACCGACGCCGCACAGACCCT
ATG
GTGACGCTGTCATCCATCCTGGAGTCTATCATCAATGACATGAGAGATCTTCCAAATACACACCCTT
TC
CACACTCCAGTCAATGCAAAGGTTGTAAAGGACTACTACAAAATCATCACTCGGCCAATGGACCTACA
A
ACACTCCGTGAAAATGTGCGTAAATGCCTCTACCCATCTCGGGAAGAGTTCAGAGAGCATCTGGAGCTA
ATT
GTGAAAAACAGTGCGACCTACAATGGGCCAAAACATTCATTGACTCAGATCTCTCAATCCATGCTGG
AT
CTCTGTGATGAAAAACTTAAAGAGAAAGAAGACAAATTAGCTCGCTTAGAGAAAGCTATCAACCCCTT
G
CTGGATGATGATGACCAAGTGGCATTTTCTTTCATTCTGGACAACATTGTCACCCAGAAAATGATGGCA
GTT
CCAGATTCTTGGCCATTTCATCACCCAGTTAATAAGAAGTTTGTTCCAGATTATTACAAAATGATTG
TC
AATCCAGTGGATTTAGAGACCATACGTAAGAACATCTCCAAGCACAAGTATCAGAGTCGGGAGAGTTT
T
CTAGATGATGTAAACCTTATTCTTGCCAACAGTGTTAAGTATAATGGACCTGAGAGTCAGTACACTAAG
ACT
GCTCAGGAGATTGTGAACATCTGTTACCAGACAATTACTGAGTATGATGAGCATTTGACTCAACTTG
AG
AAGGATATTTGTACAGCTAAAGAAGCAGCTTTGGAGGAAGCAGAATTAGAAAGCCTGGACCCAATGAC
C
CCAGGGCCCTACACATCTCAGCCTCCTGATATGTATGATACCAACACATCCCTCAGTACGTCTCGAGAT
GCC
TCTGTATTTCAAGATGAGAGCAATTTGTCTGTCTTGGATATTTCCACTGCCACTCCAGAAAAACAGA
TG
TGCCAGGGCCAAGGTAGGCTGGGTGAGGAAGACTCTGATGTGGATGTTGAAGGGTATGATGATGAGGA
G
GAGGATGGGAAACCTAAGCCTCCAGCCCCAGAAGGGGGAGATGGTGATCTTGCAGATGAAGAGGAAGGA
ACT
GTACAACAACCTGAAGCCAGTGTCCTGTATGAGGATTTGCTTATATCTGAAGGAGAAGATGATGAGG
AA
GATGCTGGGAGTGACGAAGAAGGAGACAATCCTTTCTCTGCTATCCAGCTGAGTGAAAGTGGAAGTGA
C
TCTGATGTGGGATATGGTGGAATAAGACCCAAACAACCCTTCATGCTTCAGCATGCTTCAGGAGAACAC
AAG
GATGGGCACGGAAAATGA


Translation (1826 aa):
MRPGCDLLLRAAATVTAAIMSDSDSEEDSSGGGPFTLAGILFGNISGAGQLEGESVLDDECKKHLAGLGA
L
GLGSLITELTANEELTGTGGALVNDEGWIRSTEDAVDYSDINEVAEDESQRHQQTMGSLQPLYHSDYDE
D
DYDADCEDIDCKLMPPPPPPPGPMKKDKDQDAITCVSESGEDIILPSIIAPSFLASEKVDFSSYSDSES
E
MGPQEATQAESEDGKLTLPLAGIMQHDATKLLPSVTELFPEFRPGKVLRFLHLFGPGKNVPSVWRSARR
K
RKKHRELIQEEQIQEVECSVESEVSQKSLWNYDYAPPPPPEQCLADDEITMMVPVESKFSQSTGDVDKV
T
DTKPRVAEWRYGPARLWYDMLGVSEDGSGFDYGFKLRKTQHEPVIKSRMMEEFRKLEESNGTDLLADEN
F
LMVTQLHWEDSIIWDGEDIKHKGTKPQGASLAGWLPSIKTRNVMAYNVQQGFAPTLDDDKPWYSIFPID
N
EDLVYGRWEDNIIWDAQAMPRLLEPPVLALDPNDENLILEIPDEKEEATSNSPSKESKKESSLKKSRIL
L
GKTGVIREEPQQNMSQPEVKDPWNLSNDEYYFPKQQGLRGTFGGNIIQHSIPAMELWQPFFPTHMGPIK
I
RQFHRPPLKKYSFGALSQPGPHSVQPLLKHIKKKAKMREQERQASGGGELFFMRTPQDLTGKDGDLILA
E
YSEENGPLMMQVGMATKIKNYYKRKPGKDPGAPDCKYGETVYCHTSPFLGSLHPGQLLQALENNLFRAP
V
YLHKMPETDFLIIRTRQGYYIRELVDIFVVGQQCPLFEVPGPNSRRANMHIRDFLQVFIYRLFWKSKDR
P
RRIRMEDIKKAFPSHSESSIRKRLKLCADFKRTGMDSNWWVLKSDFRLPTEEEIRAKVSPEQCCAYYSM
I
AAKQRLKDAGYGEKSFFAPEEENEEDFQMKIDDEVHAAPWNTTRAFIAAMKGKCLLEVTGVADPTGCGE
G
FSYVKIPNKPTQQKDDKEPQAVKKTVTGTDADLRRLSLKNAKQLLRKFGVPEEEIKKLSRWEVIDVVRT
M
STEQAHSGEGPMSKFARGSRFSVAEHQERYKEECQRIFDLQNKVLSSTEVLSTDTDSISAEDSDFEEMG
K
NIENMLQNKKTSSQLSREWEEQERKELRRMLLVAGSAASGNNHRDDVTASMTSLKSSATGHCLKIYRTF
R
DEEGKEYVRCETVRKPAVIDAYVRIRTTKDEKFIQKFALFDEKHREEMRKERRRIQEQLRRLKRNQEKE
K
LKGPPEKKPKKMKERPDLKLKCGACGAIGHMRTNKFCPLYYQTNVPPSKPVAMTEEQEEELEKTVIHND
N
EELIKVEGTKIVFGKQLIENVHEVRRKSLVLKFPKQQLPPKKKRRVGTTVHCDYLNIPHKSIHRRRTDP
M
VTLSSILESIINDMRDLPNTHPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKCLYPSREEFREHLEL
I
VKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMA
V
PDSWPFHHPVNKKFVPDYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTK
T
AQEIVNICYQTITEYDEHLTQLEKDICTAKEAALEEAELESLDPMTPGPYTSQPPDMYDTNTSLSTSRD
A
SVFQDESNLSVLDISTATPEKQMCQGQGRLGEEDSDVDVEGYDDEEEDGKPKPPAPEGGDGDLADEEEG
T
VQQPEASVLYEDLLISEGEDDEEDAGSDEEGDNPFSAIQLSESGSDSDVGYGGIRPKQPFMLQHASGEH
K
DGHGK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser