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Report for CCDS15851.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15851.1 Public Mus musculus 2 Ntng2 23 108 98 CCDS HistoryNCBI Gene:171171Re-query CCDS DB by CCDS ID:15851.1Re-query CCDS DB by GeneID:171171See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15851.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102873.7 ENSMUSP00000099937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102873.7Link to Ensembl Protein Viewer:ENSMUSP00000099937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102873Re-query CCDS DB by Protein ID:ENSMUSP00000099937
Original member NCBI NM_133500.2 NP_598007.1 Updated not alive Link to Nucleotide Sequence:NM_133500.2Link to Protein Sequence:NP_598007.1Re-query CCDS DB by Nucleotide ID:NM_133500Re-query CCDS DB by Protein ID:NP_598007
Current member NCBI NM_133500.3 NP_598007.1 Accepted alive Link to Nucleotide Sequence:NM_133500.3Link to Protein Sequence:NP_598007.1Re-query CCDS DB by Nucleotide ID:NM_133500Re-query CCDS DB by Protein ID:NP_598007Link to BLAST:NP_598007.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598007.1 530 Q8R4F1-2 530 100% 0 0

Chromosomal Locations for CCDS 15851.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29194821 29195053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29195647 29195781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29196982 29197149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29204898 29204924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29207418 29207590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29227578 29228221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29247828 29248040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCTGCGCCTGCTGGCTCTCTTCCTGCACTGCCTCCCGCTGGTCTCTGGGGACTATGACATCTGCAAAT
CCTGGGTGACCACAGATGAGGGCCCCACCTGGGAATTCTATGCCTGCCAGCCCAAGGTGATGCGCCTGAA
GGATTATGTCAAGGTCAAAGTGGAGCCCTCAGGCATCACGTGCGGAGACCCCCCTGAAAGGTTCTGTTCC
CATGAGAACCCCTACCTGTGCAGTAATGAGTGTGATGCCTCCAATCCCGACCTGGCCCACCCGCCCCGGC
TTATGTTTGACAGGGAAGATGAGGGACTGGCTACCTACTGGCAAAGCGTCACGTGGAGTCGCTACCCCAG
TCCACTAGAGGCCAACATCACCCTCTCATGGAACAAGAGCGTGGAGTTGACAGACGACGTGGTGGTGACT
TTTGAGTATGGCCGGCCCACGGTCATGGTCCTCGAGAAGTCCCTGGACAATGGCCGCACCTGGCAGCCCT
ACCAGTTCTATGCAGAGGACTGCATGGAGGCCTTCGGCATGTCTGCCCGACGTGCCCGAGACATGTCACC
CTCCAGCGCCCACCGGGTGCTCTGCACCGAGGAGTACTCACGCTGGGCAGGGTCCAAGAAAGAGAAGCAT
GTGCGCTTTGAGGTAAGGGACCGCTTTGCCATCTTTGCCGGCCCTGACCTGCGTAACATGGACAACCTGT
ACACGAGGATGGAGAGCGCCAAGGGCCTCAAGGAGTTCTTCACCTTCACTGACCTGCGCATGCGCCTGCT
GCGTCCTGCGCTGGGTGGCACCTACGTGCAGCGAGAGAACCTCTACAAGTACTTCTATGCCATCTCCAAT
ATCGAAGTCATTGGCAGGTGTAAGTGCAACCTGCATGCCAACCTGTGCACAGTGCGAGAGGGCAGCCTGC
AGTGTGAGTGTGAACACAACACCACGGGCCCCGACTGTGGCAGGTGCAAGAAGAACTTCCGCACACGCGC
CTGGCGAGCTGGCTCCTACCTGCCGCTGCCCCACGGCTCTCCCAATGCCTGTGCGGCCGCGGGCTCCGCC
TTTGGCAACTGCGAGTGCTACGGCCACTCCAACCGTTGCAGCTACATTGACTTCCTGAACGTGGTGACCT
GCGTCAGCTGTAAACACAACACTCGAGGCCAACACTGTCAGCACTGCCGCCTGGGCTACTATCGCAATGG
CTCCGCAGAGCTGGATGATGAGAACGTCTGCATTGAATGTAACTGTAACCAGATCGGCTCTGTGCACGAT
CGATGCAATGAGACAGGCTTCTGCGAGTGCAGGGAGGGCGCAGTGGGGCCCAAGTGCGACGACTGCCTTC
CTACACACTACTGGCGCCAAGGATGCTATCCCAATGTGTGCGACGATGACCAGCTGCTCTGCCAGAATGG
CGGCACCTGCCAGCAGAACCAACGCTGCGCCTGCCCGCCCGGCTACACCGGCATTCGCTGTGAGCAGCCC
CGCTGTGACCTCGCCGACGACGCTGGCCCGGACTGTGACCGCGCGCCAGGCATCGTCCCGCGCCCCGACA
CCCTGCTCGGATGCCTGCTGCTGCTCGGGCTGGCCGCCCGTCTGGCCTGCTGA

Translation (530 aa):
MLRLLALFLHCLPLVSGDYDICKSWVTTDEGPTWEFYACQPKVMRLKDYVKVKVEPSGITCGDPPERFCS
HENPYLCSNECDASNPDLAHPPRLMFDREDEGLATYWQSVTWSRYPSPLEANITLSWNKSVELTDDVVVT
FEYGRPTVMVLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSPSSAHRVLCTEEYSRWAGSKKEKH
VRFEVRDRFAIFAGPDLRNMDNLYTRMESAKGLKEFFTFTDLRMRLLRPALGGTYVQRENLYKYFYAISN
IEVIGRCKCNLHANLCTVREGSLQCECEHNTTGPDCGRCKKNFRTRAWRAGSYLPLPHGSPNACAAAGSA
FGNCECYGHSNRCSYIDFLNVVTCVSCKHNTRGQHCQHCRLGYYRNGSAELDDENVCIECNCNQIGSVHD
RCNETGFCECREGAVGPKCDDCLPTHYWRQGCYPNVCDDDQLLCQNGGTCQQNQRCACPPGYTGIRCEQP
RCDLADDAGPDCDRAPGIVPRPDTLLGCLLLLGLAARLAC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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