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Report for CCDS31870.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31870.1 Public Homo sapiens 12 EPYC 24 110 108 CCDS HistoryNCBI Gene:1833Re-query CCDS DB by CCDS ID:31870.1See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31870.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261172.8 ENSP00000261172.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261172.8Link to Ensembl Protein Viewer:ENSP00000261172.3Re-query CCDS DB by Nucleotide ID:ENST00000261172Re-query CCDS DB by Protein ID:ENSP00000261172
Original member Current member NCBI NM_004950.5 NP_004941.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004950.5Link to Protein Sequence:NP_004941.2Re-query CCDS DB by Nucleotide ID:NM_004950Re-query CCDS DB by Protein ID:NP_004941Link to BLAST:NP_004941.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004941.2 322 Q99645 322 100% 0 0

Chromosomal Locations for CCDS 31870.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 90964156 90964326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90970044 90970139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90971800 90972002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90972822 90972980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 90978088 90978262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 91002401 91002565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (969 nt):
ATGAAGACATTAGCAGGACTTGTTCTGGGACTTGTCATCTTTGATGCTGCTGTGACTGCCCCAACTCTAG
AGTCCATCAACTATGACTCAGAAACCTATGATGCCACCTTAGAAGACCTGGATAATTTGTACAACTATGA
AAACATACCTGTTGATAAAGTTGAGATTGAAATAGCCACAGTGATGCCTTCAGGGAACAGAGAGCTCCTC
ACTCCACCCCCACAGCCTGAGAAGGCCCAGGAAGAGGAAGAGGAGGAGGAATCTACTCCCAGGCTGATTG
ATGGCTCTTCTCCCCAGGAGCCTGAATTCACAGGGGTTCTGGGGCCACACACAAATGAAGACTTTCCAAC
CTGTCTTTTGTGTACTTGTATAAGTACCACCGTGTACTGTGATGACCATGAACTTGATGCTATTCCTCCG
CTGCCAAAGAACACCGCTTATTTCTATTCCCGCTTTAACAGAATTAAAAAGATCAACAAAAATGACTTTG
CAAGCCTAAGTGATTTAAAAAGGATTGATCTGACATCAAATTTAATATCTGAGATTGATGAAGATGCATT
CCGAAAACTGCCTCAACTTCGAGAGCTTGTCCTGCGTGACAACAAAATAAGGCAGCTCCCAGAATTGCCA
ACCACTTTGACATTTATTGATATTAGCAACAATAGACTTGGAAGGAAAGGGATAAAGCAAGAAGCATTTA
AAGACATGTATGATCTCCATCATCTGTACCTCACTGATAACAACTTGGACCACATCCCTCTGCCACTCCC
AGAAAATCTACGAGCCCTTCACCTCCAGAATAACAACATTCTGGAAATGCACGAAGATACGTTCTGCAAT
GTTAAAAATTTGACTTATATTCGTAAGGCACTAGAGGACATTCGATTGGATGGAAACCCTATTAATCTCA
GCAAAACTCCTCAAGCATACATGTGTCTACCTCGTCTGCCTGTTGGGAGCCTTGTCTAA

Translation (322 aa):
MKTLAGLVLGLVIFDAAVTAPTLESINYDSETYDATLEDLDNLYNYENIPVDKVEIEIATVMPSGNRELL
TPPPQPEKAQEEEEEEESTPRLIDGSSPQEPEFTGVLGPHTNEDFPTCLLCTCISTTVYCDDHELDAIPP
LPKNTAYFYSRFNRIKKINKNDFASLSDLKRIDLTSNLISEIDEDAFRKLPQLRELVLRDNKIRQLPELP
TTLTFIDISNNRLGRKGIKQEAFKDMYDLHHLYLTDNNLDHIPLPLPENLRALHLQNNNILEMHEDTFCN
VKNLTYIRKALEDIRLDGNPINLSKTPQAYMCLPRLPVGSLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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