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Report for CCDS29015.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29015.1 Public Mus musculus 17 Mcfd2 23 108 98 CCDS HistoryNCBI Gene:193813Re-query CCDS DB by CCDS ID:29015.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29015.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024963.10 ENSMUSP00000024963.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024963.10Link to Ensembl Protein Viewer:ENSMUSP00000024963.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000024963Re-query CCDS DB by Protein ID:ENSMUSP00000024963
Original member Current member EBI ENSMUST00000144236.8 ENSMUSP00000121820.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000144236.8Link to Ensembl Protein Viewer:ENSMUSP00000121820.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000144236Re-query CCDS DB by Protein ID:ENSMUSP00000121820
Original member Current member EBI ENSMUST00000129616.7 ENSMUSP00000123352.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129616.7Link to Ensembl Protein Viewer:ENSMUSP00000123352.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129616Re-query CCDS DB by Protein ID:ENSMUSP00000123352
Original member Current member NCBI NM_139295.3 NP_647456.1 Accepted alive Link to Nucleotide Sequence:NM_139295.3Link to Protein Sequence:NP_647456.1Re-query CCDS DB by Nucleotide ID:NM_139295Re-query CCDS DB by Protein ID:NP_647456Link to BLAST:NP_647456.1
Original member Current member NCBI NM_176808.5 NP_789778.1 Accepted alive Link to Nucleotide Sequence:NM_176808.5Link to Protein Sequence:NP_789778.1Re-query CCDS DB by Nucleotide ID:NM_176808Re-query CCDS DB by Protein ID:NP_789778Link to BLAST:NP_789778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647456.1 145 Q8K5B2 145 100% 0 0
NP_789778.1 145 Q8K5B2 145 100% 0 0

Chromosomal Locations for CCDS 29015.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 87255926 87256057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87257147 87257306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 87257928 87258073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGGCAACCCTACAGCTGCTCAGAGCTCCCTTGCTGTGTGTCCTGCTTTGGGTCTTTTGTGCTCCAGGTG
CCAGAGCCCATGACCACGGGGCTGATGTCCATCATGGCAGCGTGGGCCTGGATAAGAGCACAGTGCACGA
CCAAGAGCACATCATGGAACATCTGGAAGGTGTCATCGACCAGCCAGAGGCGGAGATGTCCCCACAGGAA
CTGCAGCTCCATTACTTCAAAATGCATGATTACGACGGCAACAGTTTGCTTGACGGCCTAGAGCTCTCCA
TAGCCATCACTCACGTGCACAAGGAGGAGGGGAGTGAGCAGGCGCCAGTCATGAGCGAGGATGAGCTCGT
CAGCATCATAGATGGTGTCCTGAGGGACGATGACAAGAACAACGACGGCTACATCGACTACGCTGAGTTT
GCAAAGTCACTGCAGTAG

Translation (145 aa):
MATLQLLRAPLLCVLLWVFCAPGARAHDHGADVHHGSVGLDKSTVHDQEHIMEHLEGVIDQPEAEMSPQE
LQLHYFKMHDYDGNSLLDGLELSIAITHVHKEEGSEQAPVMSEDELVSIIDGVLRDDDKNNDGYIDYAEF
AKSLQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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