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Report for CCDS15696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15696.1 Public Mus musculus 2 Vim 23 108 98 CCDS HistoryNCBI Gene:22352Re-query CCDS DB by CCDS ID:15696.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028062.7 ENSMUSP00000028062.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028062.7Link to Ensembl Protein Viewer:ENSMUSP00000028062.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000028062Re-query CCDS DB by Protein ID:ENSMUSP00000028062
Original member Current member NCBI NM_011701.4 NP_035831.2 Accepted alive Link to Nucleotide Sequence:NM_011701.4Link to Protein Sequence:NP_035831.2Re-query CCDS DB by Nucleotide ID:NM_011701Re-query CCDS DB by Protein ID:NP_035831Link to BLAST:NP_035831.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035831.2 466 P20152 466 100% 0 0

Chromosomal Locations for CCDS 15696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 13574432 13574994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13575541 13575601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13578413 13578508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13578589 13578750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13579421 13579546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13580018 13580238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13580640 13580683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13581613 13581698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 13582473 13582514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1401 nt):
ATGTCTACCAGGTCTGTGTCCTCGTCCTCCTACCGCAGGATGTTCGGTGGCTCCGGCACATCGAGCCGGC
CCAGCTCCAACCGGAGCTATGTGACCACGTCCACACGCACCTACAGTCTGGGCAGCGCACTGCGCCCCAG
CACTAGCCGCAGCCTCTATTCCTCATCCCCCGGTGGCGCCTATGTGACCCGGTCCTCGGCAGTGCGCCTG
CGGAGCAGCGTGCCGGGCGTGCGGCTGCTTCAAGACTCGGTGGACTTCTCGCTGGCCGACGCCATCAACA
CTGAGTTCAAGAACACCCGCACCAACGAGAAGGTAGAACTGCAGGAGCTGAATGACCGCTTTGCCAACTA
CATCGACAAGGTGCGCTTCCTCGAGCAGCAGAACAAAATCCTGCTGGCTGAGCTCGAGCAGCTCAAGGGC
CAGGGCAAGTCGCGCCTGGGCGACCTGTACGAGGAGGAGATGCGGGAGCTGCGCCGGCAGGTGGATCAGC
TCACCAACGACAAGGCCCGTGTCGAGGTGGAGCGGGACAACCTGGCCGAGGACATCATGCGGCTGCGAGA
GAAATTGCAGGAGGAGATGCTCCAGAGAGAGGAAGCCGAAAGCACCCTGCAGTCATTCAGACAGGATGTT
GACAATGCTTCTCTGGCACGTCTTGACCTTGAACGGAAAGTGGAATCCTTGCAGGAAGAAATTGCCTTTT
TGAAGAAACTGCACGATGAAGAGATCCAGGAGCTGCAGGCCCAGATTCAGGAACAGCATGTCCAGATCGA
TGTGGACGTTTCCAAGCCTGACCTCACTGCTGCCCTGCGTGATGTGCGCCAGCAGTATGAAAGCGTGGCT
GCCAAGAACCTCCAGGAGGCCGAGGAATGGTACAAGTCCAAGTTTGCTGACCTCTCTGAGGCTGCCAACC
GGAACAACGATGCCCTGCGCCAGGCCAAGCAGGAGTCAAACGAGTACCGGAGACAGGTGCAGTCACTCAC
CTGTGAAGTGGATGCCCTTAAAGGCACTAACGAGTCCCTGGAGCGCCAGATGCGTGAGATGGAAGAGAAT
TTTGCCCTTGAAGCTGCTAACTACCAGGACACTATTGGCCGCCTGCAGGATGAGATCCAAAACATGAAGG
AAGAGATGGCTCGTCACCTTCGTGAATACCAAGATCTGCTCAATGTTAAGATGGCCCTGGACATTGAGAT
CGCCACCTACAGGAAGCTGCTGGAAGGCGAGGAGAGCAGGATTTCTCTGCCTCTGCCAACCTTTTCTTCC
CTGAACCTGAGAGAAACTAACCTGGAGTCACTTCCTCTGGTTGACACCCACTCAAAAAGAACACTCCTGA
TTAAGACGGTTGAGACCAGAGATGGACAGGTGATCAATGAGACTTCTCAGCATCACGATGACCTTGAATA
A

Translation (466 aa):
MSTRSVSSSSYRRMFGGSGTSSRPSSNRSYVTTSTRTYSLGSALRPSTSRSLYSSSPGGAYVTRSSAVRL
RSSVPGVRLLQDSVDFSLADAINTEFKNTRTNEKVELQELNDRFANYIDKVRFLEQQNKILLAELEQLKG
QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAESTLQSFRQDV
DNASLARLDLERKVESLQEEIAFLKKLHDEEIQELQAQIQEQHVQIDVDVSKPDLTAALRDVRQQYESVA
AKNLQEAEEWYKSKFADLSEAANRNNDALRQAKQESNEYRRQVQSLTCEVDALKGTNESLERQMREMEEN
FALEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRKLLEGEESRISLPLPTFSS
LNLRETNLESLPLVDTHSKRTLLIKTVETRDGQVINETSQHHDDLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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