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Report for CCDS11676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11676.1 Public Homo sapiens 17 ARSG 24 110 108 CCDS HistoryNCBI Gene:22901Re-query CCDS DB by CCDS ID:11676.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11676.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448504.6 ENSP00000407193.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448504.6Link to Ensembl Protein Viewer:ENSP00000407193.2Re-query CCDS DB by Nucleotide ID:ENST00000448504Re-query CCDS DB by Protein ID:ENSP00000407193
Original member Current member EBI ENST00000621439.5 ENSP00000480910.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000621439.5Link to Ensembl Protein Viewer:ENSP00000480910.1Re-query CCDS DB by Nucleotide ID:ENST00000621439Re-query CCDS DB by Protein ID:ENSP00000480910
Original member Current member NCBI NM_001267727.2 NP_001254656.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001267727.2Link to Protein Sequence:NP_001254656.1Re-query CCDS DB by Nucleotide ID:NM_001267727Re-query CCDS DB by Protein ID:NP_001254656Link to BLAST:NP_001254656.1
Original member Current member NCBI NM_001352899.2 NP_001339828.1 Accepted alive Link to Nucleotide Sequence:NM_001352899.2Link to Protein Sequence:NP_001339828.1Re-query CCDS DB by Nucleotide ID:NM_001352899Re-query CCDS DB by Protein ID:NP_001339828Link to BLAST:NP_001339828.1
Original member Current member NCBI NM_001352900.2 NP_001339829.1 Accepted alive Link to Nucleotide Sequence:NM_001352900.2Link to Protein Sequence:NP_001339829.1Re-query CCDS DB by Nucleotide ID:NM_001352900Re-query CCDS DB by Protein ID:NP_001339829Link to BLAST:NP_001339829.1
Original member Current member NCBI NM_001352901.2 NP_001339830.1 Accepted alive Link to Nucleotide Sequence:NM_001352901.2Link to Protein Sequence:NP_001339830.1Re-query CCDS DB by Nucleotide ID:NM_001352901Re-query CCDS DB by Protein ID:NP_001339830Link to BLAST:NP_001339830.1
Original member Current member NCBI NM_001352902.2 NP_001339831.1 Accepted alive Link to Nucleotide Sequence:NM_001352902.2Link to Protein Sequence:NP_001339831.1Re-query CCDS DB by Nucleotide ID:NM_001352902Re-query CCDS DB by Protein ID:NP_001339831Link to BLAST:NP_001339831.1
Original member Current member NCBI NM_014960.5 NP_055775.2 Accepted alive Link to Nucleotide Sequence:NM_014960.5Link to Protein Sequence:NP_055775.2Re-query CCDS DB by Nucleotide ID:NM_014960Re-query CCDS DB by Protein ID:NP_055775Link to BLAST:NP_055775.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001254656.1 525 Q96EG1 525 100% 0 0
NP_001339828.1 525 Q96EG1 525 100% 0 0
NP_001339829.1 525 Q96EG1 525 100% 0 0
NP_001339830.1 525 Q96EG1 525 100% 0 0
NP_001339831.1 525 Q96EG1 525 100% 0 0
NP_055775.2 525 Q96EG1 525 100% 0 0

Chromosomal Locations for CCDS 11676.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 68307494 68307711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68343604 68343791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68347125 68347172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68351575 68351686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68356667 68356804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68368548 68368744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68370444 68370524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68385064 68385172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68395073 68395193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68401360 68401450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 68420189 68420463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1578 nt):
ATGGGCTGGCTTTTTCTAAAGGTTTTGTTGGCGGGAGTGAGTTTCTCAGGATTTCTTTATCCTCTTGTGG
ATTTTTGCATCAGTGGGAAAACAAGAGGACAGAAGCCAAACTTTGTGATTATTTTGGCCGATGACATGGG
GTGGGGTGACCTGGGAGCAAACTGGGCAGAAACAAAGGACACTGCCAACCTTGATAAGATGGCTTCGGAG
GGAATGAGGTTTGTGGATTTCCATGCAGCTGCCTCCACCTGCTCACCCTCCCGGGCTTCCTTGCTCACCG
GCCGGCTTGGCCTTCGCAATGGAGTCACACGCAACTTTGCAGTCACTTCTGTGGGAGGCCTTCCGCTCAA
CGAGACCACCTTGGCAGAGGTGCTGCAGCAGGCGGGTTACGTCACTGGGATAATAGGCAAATGGCATCTT
GGACACCACGGCTCTTATCACCCCAACTTCCGTGGTTTTGATTACTACTTTGGAATCCCATATAGCCATG
ATATGGGCTGTACTGATACTCCAGGCTACAACCACCCTCCTTGTCCAGCGTGTCCACAGGGTGATGGACC
ATCAAGGAACCTTCAAAGAGACTGTTACACTGACGTGGCCCTCCCTCTTTATGAAAACCTCAACATTGTG
GAGCAGCCGGTGAACTTGAGCAGCCTTGCCCAGAAGTATGCTGAGAAAGCAACCCAGTTCATCCAGCGTG
CAAGCACCAGCGGGAGGCCCTTCCTGCTCTATGTGGCTCTGGCCCACATGCACGTGCCCTTACCTGTGAC
TCAGCTACCAGCAGCGCCACGGGGCAGAAGCCTGTATGGTGCAGGGCTCTGGGAGATGGACAGTCTGGTG
GGCCAGATCAAGGACAAAGTTGACCACACAGTGAAGGAAAACACATTCCTCTGGTTTACAGGAGACAATG
GCCCGTGGGCTCAGAAGTGTGAGCTAGCGGGCAGTGTGGGTCCCTTCACTGGATTTTGGCAAACTCGTCA
AGGGGGAAGTCCAGCCAAGCAGACGACCTGGGAAGGAGGGCACCGGGTCCCAGCACTGGCTTACTGGCCT
GGCAGAGTTCCAGTTAATGTCACCAGCACTGCCTTGTTAAGCGTGCTGGACATTTTTCCAACTGTGGTAG
CCCTGGCCCAGGCCAGCTTACCTCAAGGACGGCGCTTTGATGGTGTGGACGTCTCCGAGGTGCTCTTTGG
CCGGTCACAGCCTGGGCACAGGGTGCTGTTCCACCCCAACAGCGGGGCAGCTGGAGAGTTTGGAGCCCTG
CAGACTGTCCGCCTGGAGCGTTACAAGGCCTTCTACATTACCGGTGGAGCCAGGGCGTGTGATGGGAGCA
CGGGGCCTGAGCTGCAGCATAAGTTTCCTCTGATTTTCAACCTGGAAGACGATACCGCAGAAGCTGTGCC
CCTAGAAAGAGGTGGTGCGGAGTACCAGGCTGTGCTGCCCGAGGTCAGAAAGGTTCTTGCAGACGTCCTC
CAAGACATTGCCAACGACAACATCTCCAGCGCAGATTACACTCAGGACCCTTCAGTAACTCCCTGCTGTA
ATCCCTACCAAATTGCCTGCCGCTGTCAAGCCGCATAA

Translation (525 aa):
MGWLFLKVLLAGVSFSGFLYPLVDFCISGKTRGQKPNFVIILADDMGWGDLGANWAETKDTANLDKMASE
GMRFVDFHAAASTCSPSRASLLTGRLGLRNGVTRNFAVTSVGGLPLNETTLAEVLQQAGYVTGIIGKWHL
GHHGSYHPNFRGFDYYFGIPYSHDMGCTDTPGYNHPPCPACPQGDGPSRNLQRDCYTDVALPLYENLNIV
EQPVNLSSLAQKYAEKATQFIQRASTSGRPFLLYVALAHMHVPLPVTQLPAAPRGRSLYGAGLWEMDSLV
GQIKDKVDHTVKENTFLWFTGDNGPWAQKCELAGSVGPFTGFWQTRQGGSPAKQTTWEGGHRVPALAYWP
GRVPVNVTSTALLSVLDIFPTVVALAQASLPQGRRFDGVDVSEVLFGRSQPGHRVLFHPNSGAAGEFGAL
QTVRLERYKAFYITGGARACDGSTGPELQHKFPLIFNLEDDTAEAVPLERGGAEYQAVLPEVRKVLADVL
QDIANDNISSADYTQDPSVTPCCNPYQIACRCQAA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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