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Report for CCDS31621.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31621.1 Public Homo sapiens 11 TBX10 24 110 108 CCDS HistoryNCBI Gene:347853Re-query CCDS DB by CCDS ID:31621.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31621.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000335385.4 ENSP00000335191.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000335385.4Link to Ensembl Protein Viewer:ENSP00000335191.3Re-query CCDS DB by Nucleotide ID:ENST00000335385Re-query CCDS DB by Protein ID:ENSP00000335191
Original member Current member NCBI NM_005995.5 NP_005986.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005995.5Link to Protein Sequence:NP_005986.2Re-query CCDS DB by Nucleotide ID:NM_005995Re-query CCDS DB by Protein ID:NP_005986Link to BLAST:NP_005986.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005986.2 385 O75333 385 100% 0 0

Chromosomal Locations for CCDS 31621.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67631605 67631894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67632318 67632412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67632603 67632670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67632948 67633103 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67634189 67634360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67634816 67634917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67634996 67635263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67639466 67639472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGCAGCCTTCCTATCTGCTGGCCTCGGCATACTTGCACCCTCAGAGACCTACCCCCTACCTACAACCA
GCTCTGGCTGGGAGCCCCGGCTGGGGTCACCATTCCCATCAGGCCCTTGCACCAGCTCTACTGGGGCCCA
AGCTGTGGCCGAGCCCACTGGGCAGGGCCCCAAGAACCCACGTGTGTCCAGAGTGACAGTTCAGCTGGAG
ATGAAGCCTCTGTGGGAGGAATTCAACCAGCTGGGCACTGAGATGATCGTCACCAAGGCAGGCAGGAGGA
TGTTCCCCCCCTTCCAGGTGAAGATCCTGGGCATGGACTCCCTGGCCGACTACGCCCTGCTCATGGACTT
CATCCCCCTGGACGACAAGAGATACAGGTATGCCTTCCACAGCTCGGCCTGGCTGGTGGCGGGCAAGGCA
GACCCAGCCACACCTGGCCGCGTGCACTTCCACCCCGACTCGCCAGCCAAGGGTGCCCAGTGGATGCGCC
AGATTGTGTCCTTTGACAAGCTCAAGCTGACCAACAACCTGCTGGATGACAATGGCCACATCATTCTCAA
CTCTATGCACCGCTACCAGCCCCGTTTCCACGTGGTCTTCGTGGACCCACGCAAGGACAGTGAGCGCTAT
GCCCAGGAGAACTTCAAGTCCTTCATCTTCACAGAGACCCAGTTCACAGCAGTGACAGCCTATCAGAACC
ACAGGATCACCCAGCTGAAAATCGCCAGCAACCCTTTTGCCAAAGGCTTTAGAGAGAGTGACCTGGACTC
CTGGCCTGTGGCCCCACGGCCCCTGCTCAGTGTCCCAGCCCGGAGTCACAGCAGCCTCAGTCCCTGTGTG
CTGAAGGGTGCCACAGACAGGGAGAAAGACCCCAACAAAGCTTCAGCTTCCACCTCCAAGACCCCTGCTT
GGCTCCATCATCAGCTGCTGCCCCCACCTGAGGTCCTGCTGGCCCCGGCCACCTACAGGCCTGTCACGTA
TCAGAGCCTGTACTCTGGAGCCCCGAGCCACCTAGGGATCCCAAGGACCCGACCAGCACCATACCCCCTC
CCCAACATCCGGGCTGATAGGGATCAAGGAGGCCTGCCTCTCCCAGCTGGGCTGGGGCTCCTGTCCCCCA
CTGTGGTGTGCCTGGGGCCTGGCCAGGACTCCCAGTGA

Translation (385 aa):
MAAFLSAGLGILAPSETYPLPTTSSGWEPRLGSPFPSGPCTSSTGAQAVAEPTGQGPKNPRVSRVTVQLE
MKPLWEEFNQLGTEMIVTKAGRRMFPPFQVKILGMDSLADYALLMDFIPLDDKRYRYAFHSSAWLVAGKA
DPATPGRVHFHPDSPAKGAQWMRQIVSFDKLKLTNNLLDDNGHIILNSMHRYQPRFHVVFVDPRKDSERY
AQENFKSFIFTETQFTAVTAYQNHRITQLKIASNPFAKGFRESDLDSWPVAPRPLLSVPARSHSSLSPCV
LKGATDREKDPNKASASTSKTPAWLHHQLLPPPEVLLAPATYRPVTYQSLYSGAPSHLGIPRTRPAPYPL
PNIRADRDQGGLPLPAGLGLLSPTVVCLGPGQDSQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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