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Report for CCDS31291.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
31291.1 Public Homo sapiens 10 CCDC172 24 110 108 CCDS HistoryNCBI Gene:374355Re-query CCDS DB by CCDS ID:31291.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 31291.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333254.4 ENSP00000329860.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333254.4Link to Ensembl Protein Viewer:ENSP00000329860.3Re-query CCDS DB by Nucleotide ID:ENST00000333254Re-query CCDS DB by Protein ID:ENSP00000329860
Original member Current member NCBI NM_198515.3 NP_940917.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198515.3Link to Protein Sequence:NP_940917.1Re-query CCDS DB by Nucleotide ID:NM_198515Re-query CCDS DB by Protein ID:NP_940917Link to BLAST:NP_940917.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940917.1 258 P0C7W6 258 100% 0 0

Chromosomal Locations for CCDS 31291.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 116325012 116325090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116325303 116325388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116340734 116340850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116342036 116342201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116357380 116357481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116357836 116357938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116378423 116378510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 116379323 116379358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (777 nt):
ATGAGCTTGGAGTCCCTGTTTCAGCACATCATCTTCACCGAGCATCAGGCGGAGGAGAGTCGCCGTTTGA
TGCGAGAAGTAAGGTCGGAAATAACCAGATGTCGTGAAAAAATTAAGAAAGCAACGGAGGAGCTGAATGA
AGAGAAAATCAAGCTGGAATCTAAGGTTCAACAGTTTTTTGAAAAATCCTTCTTCTTACAGCTTTTGAAA
GCTCATGAAAATGCTTTAGAAAAACAGTACAGTGAAATTACAAACCATAGGAATATGCTTCTTCAAACCT
TTGAGGCTATAAAGAAACAAATGATAGAGGAGGAAGACAAATTTATTAAGGAAATTACAGACTTTAATAA
TGATTATGAAATAACAAAGAAAAGAGAGCTTTTGATGAAAGAAAATGTCAAGATTGAAATATCTGACTTA
GAAAACCAAGCAAACATGTTGAAAAGTGAAATGAAGTCAATGGAACATGATAGTAGCCAGTTAAATGAAC
TTCAAAAACAAAAGAGTGAATTGATACAAGAATTATTTACTCTCCAAAGAAAACTTAAAGTTTTTGAAGA
TGAAGAGAATGAATCCATTTGTACTACCAAATATCTAGAGGCAGAAAAAATAAAAATCAGTGAAAAGCCT
CAAAATGATACAGAATGCTTAAGACTTAAAAAAGAATTAGAACTTTATAAGGAAGATGACATGGAAAGTG
TTTATGAAGCTCTCCAAACAGAAATAGAATTTTTGGAGTTGACATTGGCACAGAAAGATCTTCAGGAAAG
CAAATAA

Translation (258 aa):
MSLESLFQHIIFTEHQAEESRRLMREVRSEITRCREKIKKATEELNEEKIKLESKVQQFFEKSFFLQLLK
AHENALEKQYSEITNHRNMLLQTFEAIKKQMIEEEDKFIKEITDFNNDYEITKKRELLMKENVKIEISDL
ENQANMLKSEMKSMEHDSSQLNELQKQKSELIQELFTLQRKLKVFEDEENESICTTKYLEAEKIKISEKP
QNDTECLRLKKELELYKEDDMESVYEALQTEIEFLELTLAQKDLQESK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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