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Report for CCDS58997.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
58997.1 Public Homo sapiens 6 STMND1 24 110 108 CCDS HistoryNCBI Gene:401236Re-query CCDS DB by CCDS ID:58997.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 11, NCBI annotation release 103, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 58997.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000536551.6 ENSP00000455698.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000536551.6Link to Ensembl Protein Viewer:ENSP00000455698.1Re-query CCDS DB by Nucleotide ID:ENST00000536551Re-query CCDS DB by Protein ID:ENSP00000455698
Original member Current member NCBI NM_001190766.2 NP_001177695.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001190766.2Link to Protein Sequence:NP_001177695.1Re-query CCDS DB by Nucleotide ID:NM_001190766Re-query CCDS DB by Protein ID:NP_001177695Link to BLAST:NP_001177695.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001177695.1 276 H3BQB6 276 100% 0 0

Chromosomal Locations for CCDS 58997.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 17102258 17102338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17114962 17115139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17120607 17120758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17129112 17129243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 17130594 17130881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (831 nt):
ATGGGCTGTGGACCTTCCCAACCTGCTGAAGACCGGAGACGTGTACGCGCGCCCAAGAAGGGCTGGAAAG
AGGAATTCAAGGCTGATGTCAGTGTGCCTCATACTGGGGAAAATTGCAGCCCCCGGATGGAAGCTGCTCT
GACCAAGAATACTGTGGACATTGCAGAAGGCCTGGAACAAGTCCAGATGGGAAGCTTACCTGGAACCATT
TCAGAAAATTCTCCATCTCCTAGTGAAAGAAACAGACGAGTAAATTCAGACCTAGTGACCAATGGATTAA
TCAATAAACCCCAATCCCTAGAGAGTCGAGAGCGACAGAAGTCATCAGATATCCTGGAGGAACTAATTGT
TCAAGGAATTATACAAAGCCACAGCAAAGTATTTAGAAATGGAGAATCATATGATGTCACGTTGACTACG
ACTGAGAAGCCATTGAGAAAGCCACCTTCCAGACTGAAAAAACTCAAGATCAAAAAGCAAGTGAAGGATT
TCACAATGAAGGACATCGAGGAGAAGATGGAGGCTGCCGAGGAGCGCAGGAAGACTAAAGAAGAAGAAAT
AAGAAAAAGGCTACGGAGTGACCGACTTTTGCCTTCAGCCAATCACTCAGATTCAGCTGAATTAGATGGG
GCCGAGGTTGCATTTGCCAAAGGACTTCAAAGGGTGAGGTCTGCTGGATTTGAACCATCTGACCTGCAGG
GAGGAAAACCATTGAAGAGGAAGAAGAGTAAATGTGATGCAACCTTGATTGATAGAAACGAAAGTGATGA
AAGTTTTGGGGTCGTGGAGTCAGACATGTCCTACAACCAAGCAGATGACATAGTCTACTAA

Translation (276 aa):
MGCGPSQPAEDRRRVRAPKKGWKEEFKADVSVPHTGENCSPRMEAALTKNTVDIAEGLEQVQMGSLPGTI
SENSPSPSERNRRVNSDLVTNGLINKPQSLESRERQKSSDILEELIVQGIIQSHSKVFRNGESYDVTLTT
TEKPLRKPPSRLKKLKIKKQVKDFTMKDIEEKMEAAEERRKTKEEEIRKRLRSDRLLPSANHSDSAELDG
AEVAFAKGLQRVRSAGFEPSDLQGGKPLKRKKSKCDATLIDRNESDESFGVVESDMSYNQADDIVY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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