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Report for CCDS336.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
336.1 Public Homo sapiens 1 MATN1 24 110 108 CCDS HistoryNCBI Gene:4146Re-query CCDS DB by CCDS ID:336.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 336.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373765.5 ENSP00000362870.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373765.5Link to Ensembl Protein Viewer:ENSP00000362870.4Re-query CCDS DB by Nucleotide ID:ENST00000373765Re-query CCDS DB by Protein ID:ENSP00000362870
Original member Current member NCBI NM_002379.3 NP_002370.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002379.3Link to Protein Sequence:NP_002370.1Re-query CCDS DB by Nucleotide ID:NM_002379Re-query CCDS DB by Protein ID:NP_002370Link to BLAST:NP_002370.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002370.1 496 P21941 496 100% 0 0

Chromosomal Locations for CCDS 336.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 30713582 30713631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30714247 30714327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30715157 30715309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30715909 30716325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30716790 30716915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30718735 30718957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30721405 30721751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 30723458 30723551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1491 nt):
ATGAGGGTCCTCTCTGGCACTAGCCTCATGCTCTGCAGCCTGCTGCTGCTGCTCCAGGCCCTGTGCAGCC
CT
GGCCTCGCCCCCCAGTCCAGAGGCCATCTCTGCCGGACGCGGCCCACAGACCTGGTGTTTGTTGTCGA
C
AGCTCTCGCAGCGTTCGGCCTGTTGAATTTGAGAAAGTGAAGGTATTCCTGTCCCAGGTCATCGAGTCG
CTG
GACGTGGGGCCCAATGCCACCCGGGTGGGCATGGTCAACTATGCCAGCACCGTGAAGCAGGAGTTCT
CG
CTGCGGGCTCATGTCTCCAAGGCCGCACTGCTGCAGGCTGTGCGCCGTATCCAGCCGCTGTCCACAGG
C
ACCATGACCGGCCTGGCCATCCAGTTCGCTATCACCAAAGCCTTCGGCGATGCAGAGGGTGGTCGTTCC
AGG
TCCCCTGACATCAGCAAGGTGGTCATCGTGGTGACAGACGGGAGGCCCCAGGACAGCGTGCAGGACG
TG
TCTGCGCGGGCCCGGGCCAGCGGCGTCGAGCTGTTCGCCATCGGAGTGGGCAGCGTGGACAAGGCCAC
G
CTGCGGCAGATCGCCAGCGAGCCGCAGGACGAACACGTCGATTACGTGGAGAGCTACAGCGTCATCGAG
AAG
CTGTCCAGGAAGTTCCAGGAGGCCTTCTGCGTGGTGTCAGACCTGTGCGCCACAGGGGACCATGACT
GT
GAGCAGGTGTGCATCAGCTCCCCCGGTTCCTACACCTGCGCCTGCCACGAGGGCTTCACTCTGAACAG
C
GACGGCAAGACCTGCAATGTCTGCAGTGGTGGTGGTGGCAGCTCGGCCACTGACCTGGTCTTCCTCATT
GAC
GGATCCAAGAGTGTGAGGCCAGAGAACTTTGAGCTGGTGAAGAAGTTCATCAGTCAGATCGTGGATA
CG
CTGGACGTGTCAGACAAGCTGGCCCAGGTGGGGCTGGTGCAGTACTCAAGCTCTGTGCGCCAGGAGTT
C
CCCCTGGGTCGCTTCCACACCAAGAAGGACATCAAGGCGGCTGTGCGGAATATGTCCTACATGGAGAAG
GGC
ACAATGACTGGGGCTGCTCTCAAGTACCTCATTGACAATTCCTTCACTGTGTCCAGTGGGGCTAGGC
CC
GGGGCCCAGAAGGTGGGCATTGTCTTCACTGATGGCCGGAGCCAGGACTACATTAATGATGCTGCCAA
G
AAGGCCAAAGACCTCGGCTTTAAGATGTTTGCTGTGGGTGTGGGCAATGCCGTGGAGGATGAGCTGAGG
GAA
ATAGCCTCAGAGCCTGTGGCAGAGCACTACTTCTACACGGCTGACTTCAAGACCATCAACCAGATAG
GC
AAGAAGTTGCAGAAGAAGATCTGTGTGGAGGAAGACCCGTGTGCCTGCGAGTCCCTGGTGAAATTCCA
A
GCCAAAGTGGAGGGGCTGCTGCAGGCCCTGACCAGGAAACTGGAAGCTGTGAGTAAGCGGCTGGCCATC
CTG
GAGAACACAGTTGTCTAA


Translation (496 aa):
MRVLSGTSLMLCSLLLLLQALCSPGLAPQSRGHLCRTRPTDLVFVVDSSRSVRPVEFEKVKVFLSQVIES
L
DVGPNATRVGMVNYASTVKQEFSLRAHVSKAALLQAVRRIQPLSTGTMTGLAIQFAITKAFGDAEGGRS
R
SPDISK
VVIVVTDGRPQDSVQDVSARARASGVELFAIGVGSVDKATLRQIASEPQDEHVDYVESYSVIE
K
LSRKFQEAFC
VVSDLCATGDHDCEQVCISSPGSYTCACHEGFTLNSDGKTCNVCSGGGGSSATDLVFLI
D
GSKSVRPENFELVKKFISQIVDTLDVSDKLAQVGLVQYSSSVRQEFPLGRFHTKKDIKAAVRNMSYMEK
G
TMTGAALKYLIDNSFTVSSGARPGAQKVGIVFTDGRSQDYINDAAKKAKDL
GFKMFAVGVGNAVEDELR
E
IASEPVAEHYFYTADFKTINQIGKKLQKKICV
EEDPCACESLVKFQAKVEGLLQALTRKLEAVSKRLAI
L
ENTVV




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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