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Report for CCDS41589.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41589.1 Public Homo sapiens 11 TSPAN4 24 110 108 CCDS HistoryNCBI Gene:7106Re-query CCDS DB by CCDS ID:41589.1Re-query CCDS DB by GeneID:7106See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41589.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397396.5 ENSP00000380551.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397396.5Link to Ensembl Protein Viewer:ENSP00000380551.1Re-query CCDS DB by Nucleotide ID:ENST00000397396Re-query CCDS DB by Protein ID:ENSP00000380551
Original member Current member EBI ENST00000525201.5 ENSP00000431943.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000525201.5Link to Ensembl Protein Viewer:ENSP00000431943.1Re-query CCDS DB by Nucleotide ID:ENST00000525201Re-query CCDS DB by Protein ID:ENSP00000431943
Original member Current member NCBI NM_001025239.2 NP_001020410.1 Accepted alive Link to Nucleotide Sequence:NM_001025239.2Link to Protein Sequence:NP_001020410.1Re-query CCDS DB by Nucleotide ID:NM_001025239Re-query CCDS DB by Protein ID:NP_001020410Link to BLAST:NP_001020410.1

Chromosomal Locations for CCDS 41589.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 862679 862741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 864437 864511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865513 865614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865694 865825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 865918 866001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 866562 866630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (525 nt):
ATGGCCATCGGCTTCGTGGGCTGCCTGGGTGCCATCAAGGAGAACAAGTGCCTCCTGCTCACTTTCTTCC
TGCTGCTGCTGCTGGTGTTCCTGCTGGAGGCCACCATCGCCATCCTCTTCTTCGCCTACACGGACAAGAT
TGACAGGTATGCCCAGCAAGACCTGAAGAAAGGCTTGCACCTGTACGGCACGCAGGGCAACGTGGGCCTC
ACCAACGCCTGGAGCATCATCCAGACCGACTTCCGCTGCTGTGGCGTCTCCAACTACACTGACTGGTTCG
AGGTGTACAACGCCACGCGGGTACCTGACTCCTGCTGCTTGGAGTTCAGTGAGAGCTGTGGGCTGCACGC
CCCCGGCACCTGGTGGAAGGCGCCGTGCTACGAGACGGTGAAGGTGTGGCTTCAGGAGAACCTGCTGGCT
GTGGGCATCTTTGGGCTGTGCACGGCGCTGGTGCAGATCCTGGGCCTGACCTTCGCCATGACCATGTACT
GCCAAGTGGTCAAGGCAGACACCTACTGCGCGTAG

Translation (174 aa):
MAIGFVGCLGAIKENKCLLLTFFLLLLLVFLLEATIAILFFAYTDKIDRYAQQDLKKGLHLYGTQGNVGL
TNAWSIIQTDFRCCGVSNYTDWFEVYNATRVPDSCCLEFSESCGLHAPGTWWKAPCYETVKVWLQENLLA
VGIFGLCTALVQILGLTFAMTMYCQVVKADTYCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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