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Report for CCDS41633.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41633.1 Public Homo sapiens 11 DEPDC7 24 110 108 CCDS HistoryNCBI Gene:91614Re-query CCDS DB by CCDS ID:41633.1Re-query CCDS DB by GeneID:91614See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41633.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311388.7 ENSP00000308971.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311388.7Link to Ensembl Protein Viewer:ENSP00000308971.3Re-query CCDS DB by Nucleotide ID:ENST00000311388Re-query CCDS DB by Protein ID:ENSP00000308971
Original member Current member NCBI NM_139160.3 NP_631899.2 Accepted alive Link to Nucleotide Sequence:NM_139160.3Link to Protein Sequence:NP_631899.2Re-query CCDS DB by Nucleotide ID:NM_139160Re-query CCDS DB by Protein ID:NP_631899Link to BLAST:NP_631899.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_631899.2 502 Q96QD5-2 502 100% 0 0

Chromosomal Locations for CCDS 41633.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 33016540 33016585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33025659 33026049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33027686 33027813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33028603 33028792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33031378 33031589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33032336 33032478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33032668 33032793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33032889 33032967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 33033262 33033455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGAGAGGTTTATGTGAGTTCTACTGGCAGGAATTTGGCATAAAAGGTTTCAGTGTAGCTCAGAAGCCAT
TTGGAGCCACGTATGTATGGAGCAGCATCATAAACACTCTTCAAACACAAGTGGAAGTGAAAAAACGAAG
GCACCGTTTAAAACGACATAATGACTGCTTTGTTGGTTCAGAAGCTGTGGATGTCATTTTTTCTCACCTA
ATTCAGAATAAGTATTTTGGTGATGTAGATATTCCTCGAGCCAAAGTGGTGAGAGTGTGTCAAGCGCTTA
TGGACTACAAAGTATTTGAAGCAGTTCCAACCAAAGTCTTTGGAAAAGACAAAAAACCTACATTTGAAGA
TAGTAGTTGCAGCCTTTATAGATTCACCACAATACCTAACCAAGACAGTCAGTTAGGCAAAGAGAACAAA
CTATATTCACCTGCCAGGTATGCAGATGCATTATTTAAGTCATCCGATATCAGATCAGCCAGTTTAGAGG
ACCTGTGGGAAAATCTGAGTTTAAAGCCTGCCAACTCCCCTCATGTAAATATCTCTGCAACCTTGTCTCC
ACAAGTTATTAATGAAGTGTGGCAAGAAGAAACAATTGGGCGTCTACTACAACTTGTAGACCTTCCACTT
CTTGACTCCTTACTGAAACAGCAAGAGGCTGTACCTAAAATTCCTCAACCTAAGAGGCAGTCCACCATGG
TCAACAGCAGTAACTATCTGGATCGAGGGATTCTCAAGGCTTATAGTGACTCTCAGGAAGATGAGTGGCT
CTCGGCAGCAATTGACTGTTTAGAATACCTTCCAGACCAAATGGTGGTGGAAATAAGCAGAAGCTTTCCT
GAGCAACCAGACCGAACAGACTTAGTGAAAGAACTTCTGTTTGATGCCATTGGCAGATATTACAGTAGTA
GGGAACCTCTGTTAAATCACTTATCTGACGTTCATAATGGAATTGCAGAACTCTTAGTGAATGGGAAGAC
GGAAATAGCTTTAGAAGCTACCCAGCTCCTTCTAAAGCTTTTAGATTTCCAAAATAGAGAAGAATTTAGA
AGACTACTGTATTTCATGGCTGTTGCAGCAAATCCTTCTGAGTTTAAATTACAGAAAGAAAGTGACAACC
GAATGGTTGTGAAAAGGATATTCTCAAAAGCTATTGTTGACAATAAAAATTTATCCAAAGGCAAAACAGA
TCTTCTGGTACTCTTTTTAATGGATCATCAGAAAGATGTTTTTAAGATTCCTGGAACTCTACATAAAATT
GTAAGTGTTAAGCTTATGGCCATACAGAACGGAAGAGATCCAAATAGAGATGCAGGATATATTTATTGCC
AGAGAATTGATCAACGTGACTATTCCAACAATACAGAGAAGACAACCAAAGATGAGCTGTTGAATTTACT
AAAAACTCTTGATGAGGATTCAAAACTTTCTGCCAAAGAGAAGAAAAAATTGCTAGGTCAATTCTATAAG
TGTCACCCAGACATCTTTATTGAGCATTTTGGAGACTGA

Translation (502 aa):
MRGLCEFYWQEFGIKGFSVAQKPFGATYVWSSIINTLQTQVEVKKRRHRLKRHNDCFVGSEAVDVIFSHL
IQNKYFGDVDIPRAKVVRVCQALMDYKVFEAVPTKVFGKDKKPTFEDSSCSLYRFTTIPNQDSQLGKENK
LYSPARYADALFKSSDIRSASLEDLWENLSLKPANSPHVNISATLSPQVINEVWQEETIGRLLQLVDLPL
LDSLLKQQEAVPKIPQPKRQSTMVNSSNYLDRGILKAYSDSQEDEWLSAAIDCLEYLPDQMVVEISRSFP
EQPDRTDLVKELLFDAIGRYYSSREPLLNHLSDVHNGIAELLVNGKTEIALEATQLLLKLLDFQNREEFR
RLLYFMAVAANPSEFKLQKESDNRMVVKRIFSKAIVDNKNLSKGKTDLLVLFLMDHQKDVFKIPGTLHKI
VSVKLMAIQNGRDPNRDAGYIYCQRIDQRDYSNNTEKTTKDELLNLLKTLDEDSKLSAKEKKKLLGQFYK
CHPDIFIEHFGD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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