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Report for CCDS4587.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4587.1 Public Homo sapiens 6 H2BC5 24 110 108 CCDS HistoryNCBI Gene:3017Re-query CCDS DB by CCDS ID:4587.1Re-query CCDS DB by GeneID:3017See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4587.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000289316.2 ENSP00000289316.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000289316.2Link to Ensembl Protein Viewer:ENSP00000289316.2Re-query CCDS DB by Nucleotide ID:ENST00000289316Re-query CCDS DB by Protein ID:ENSP00000289316
Original member Current member EBI ENST00000377777.6 ENSP00000367008.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377777.6Link to Ensembl Protein Viewer:ENSP00000367008.4Re-query CCDS DB by Nucleotide ID:ENST00000377777Re-query CCDS DB by Protein ID:ENSP00000367008
Original member Current member NCBI NM_021063.4 NP_066407.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_021063.4Link to Protein Sequence:NP_066407.1Re-query CCDS DB by Nucleotide ID:NM_021063Re-query CCDS DB by Protein ID:NP_066407Link to BLAST:NP_066407.1
Original member Current member NCBI NM_138720.2 NP_619790.1 Accepted alive Link to Nucleotide Sequence:NM_138720.2Link to Protein Sequence:NP_619790.1Re-query CCDS DB by Nucleotide ID:NM_138720Re-query CCDS DB by Protein ID:NP_619790Link to BLAST:NP_619790.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_066407.1 126 P58876 126 100% 0 0
NP_619790.1 126 P58876 126 100% 0 0

Chromosomal Locations for CCDS 4587.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 26158170 26158550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (381 nt):
ATGCCTGAACCTACCAAGTCTGCTCCTGCCCCAAAGAAGGGCTCCAAGAAGGCGGTGACTAAGGCTCAGA
AGAAGGACGGGAAGAAGCGCAAGCGCAGCCGCAAGGAGAGCTATTCAGTGTATGTGTACAAGGTGCTGAA
GCAGGTCCATCCCGACACCGGCATCTCTTCCAAGGCAATGGGGATCATGAATTCCTTCGTCAACGACATC
TTCGAGCGCATCGCAGGCGAGGCTTCCCGCCTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGG
AGATCCAGACGGCCGTGCGCCTGCTGCTTCCGGGGGAGCTGGCCAAGCACGCCGTGTCGGAGGGCACCAA
GGCCGTCACCAAGTACACCAGTTCCAAGTAA

Translation (126 aa):
MPEPTKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDI
FERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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