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Report for CCDS46483.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
46483.1 |
Public |
Homo sapiens |
2 |
SPATS2L |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:26010](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:46483.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:26010](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 2 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 46483.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000358677.9 |
ENSP00000351503.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000358677.9](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000351503.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000358677](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000351503](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409718.5 |
ENSP00000386336.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409718.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386336.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409718](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386336](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409140.8 |
ENSP00000386730.3 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409140.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386730.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409140](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386730](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000409988.7 |
ENSP00000386931.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000409988.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000386931.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000409988](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000386931](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000451764.6 |
ENSP00000391467.2 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000451764.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000391467.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000451764](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000391467](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001100422.1 |
NP_001093892.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001100422.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093892.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001100422](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093892](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093892.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001100423.2 |
NP_001093893.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001100423.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001093893.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001100423](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001093893](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001093893.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001282735.1 |
NP_001269664.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001282735.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001269664.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001282735](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001269664](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001269664.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_015535.3 |
NP_056350.2 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_015535.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_056350.2](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_015535](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_056350](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_056350.2](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 46483.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1677 nt): ATGGCTGAACTCAATACTCATGTGAATGTCAAGGAAAAGATCTATGCAGTTAGATCAGTTGTTCCCAACA AAAGCAATAATGAAATAGTCCTGGTGCTCCAACAGTTTGATTTTAATGTGGATAAAGCCGTGCAAGCCTT TGTGGATGGCAGTGCAATTCAAGTTCTAAAAGAATGGAATATGACAGGAAAAAAGAAGAACAATAAAAGA AAAAGAAGCAAGTCCAAGCAGCATCAAGGCAACAAAGATGCTAAAGACAAGGTGGAGAGGCCTGAGGCAG GGCCCCTGCAGCCGCAGCCACCACAGATTCAAAACGGCCCCATGAATGGCTGCGAGAAGGACAGCTCGTC CACAGATTCTGCTAACGAAAAACCAGCCCTTATCCCTCGTGAGAAAAAGATCTCGATACTTGAGGAACCT TCAAAGGCACTTCGTGGGGTCACAGAAGGCAACAGACTACTGCAACAGAAACTATCCTTAGATGGGAACC CCAAACCTATACATGGAACAACAGAGAGGTCAGATGGCCTACAGTGGTCAGCTGAGCAGCCTTGTAACCC AAGCAAGCCTAAGGCAAAAACATCTCCTGTTAAGTCCAATACCCCTGCAGCTCATCTTGAAATAAAGCCA GATGAGTTGGCAAAGAAAAGAGGCCCAAATATTGAGAAATCAGTGAAGGATTTGCAACGCTGCACCGTTT CTCTAACTAGATATCGCGTCATGATTAAGGAAGAAGTGGATAGTTCCGTGAAGAAGATCAAAGCTGCCTT TGCTGAATTACACAACTGCATCATTGACAAAGAAGTTTCATTAATGGCAGAAATGGATAAAGTTAAAGAA GAAGCCATGGAAATCCTGACTGCTCGTCAGAAGAAAGCAGAAGAACTAAAGAGACTCACTGACCTTGCCA GTCAGATGGCAGAGATGCAGCTGGCCGAACTCAGGGCAGAAATTAAGCACTTTGTCAGCGAGCGTAAATA TGACGAGGAGCTCGGGAAAGCTGCCCGGTTTTCCTGTGACATCGAACAGCTGAAGGCCCAAATCATGCTC TGCGGAGAAATTACACATCCAAAGAACAACTATTCCTCAAGAACTCCCTGCAGCTCCCTGCTGCCTCTGC TGAATGCGCACGCAGCAACCTCTGGGAAACAGAGTAACTTTTCCCGAAAATCATCCACTCACAATAAGCC CTCTGAAGGCAAAGCGGCAAACCCCAAAATGGTGAGCAGTCTCCCCAGCACCGCCGACCCCTCTCACCAG ACCATGCCGGCCAACAAGCAGAATGGATCTTCTAACCAAAGACGGAGATTTAATCCACAGTATCATAACA ACAGGCTAAATGGGCCTGCCAAGTCGCAGGGCAGTGGGAATGAAGCCGAGCCACTGGGAAAGGGCAACAG CCGCCACGAACACAGAAGACAGCCGCACAACGGCTTCCGGCCCAAAAACAAAGGCGGTGCCAAAAATCAA GAGGCTTCCTTGGGGATGAAGACCCCCGAGGCCCCGGCCCATTCTGAAAAGCCCCGGCGAAGGCAGCACG CTGCAGACACCTCGGAGGCCAGGCCCTTCCGGGGTAGTGTCGGTAGGGTTTCACAGTGCAATCTCTGCCC CACGAGAATAGAAGTTTCCACAGATGCAGCAGTTCTCTCAGTCCCGGCTGTGACGTTGGTGGCCTGA
Translation (558 aa): MAELNTHVNVKEKIYAVRSVVPNKSNNEIVLVLQQFDFNVDKAVQAFVDGSAIQVLKEWNMTGKKKNNKR KRSKSKQHQGNKDAKDKVERPEAGPLQPQPPQIQNGPMNGCEKDSSSTDSANEKPALIPREKKISILEEP SKALRGVTEGNRLLQQKLSLDGNPKPIHGTTERSDGLQWSAEQPCNPSKPKAKTSPVKSNTPAAHLEIKP DELAKKRGPNIEKSVKDLQRCTVSLTRYRVMIKEEVDSSVKKIKAAFAELHNCIIDKEVSLMAEMDKVKE EAMEILTARQKKAEELKRLTDLASQMAEMQLAELRAEIKHFVSERKYDEELGKAARFSCDIEQLKAQIML CGEITHPKNNYSSRTPCSSLLPLLNAHAATSGKQSNFSRKSSTHNKPSEGKAANPKMVSSLPSTADPSHQ TMPANKQNGSSNQRRRFNPQYHNNRLNGPAKSQGSGNEAEPLGKGNSRHEHRRQPHNGFRPKNKGGAKNQ EASLGMKTPEAPAHSEKPRRRQHAADTSEARPFRGSVGRVSQCNLCPTRIEVSTDAAVLSVPAVTLVA
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