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Report for CCDS142.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
142.1 Public Homo sapiens 1 PLOD1 24 110 108 CCDS HistoryNCBI Gene:5351Re-query CCDS DB by CCDS ID:142.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 142.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000196061.5 ENSP00000196061.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000196061.5Link to Ensembl Protein Viewer:ENSP00000196061.4Re-query CCDS DB by Nucleotide ID:ENST00000196061Re-query CCDS DB by Protein ID:ENSP00000196061
Original member Current member NCBI NM_000302.4 NP_000293.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000302.4Link to Protein Sequence:NP_000293.2Re-query CCDS DB by Nucleotide ID:NM_000302Re-query CCDS DB by Protein ID:NP_000293Link to BLAST:NP_000293.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000293.2 727 Q02809-1 727 100% 0 0

Chromosomal Locations for CCDS 142.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 11934780 11934855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11947976 11948067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11949773 11949906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11950357 11950520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11952623 11952735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11954830 11954893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11956917 11957014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11957842 11957943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11958516 11958647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11960646 11960767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11963532 11963636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11964175 11964300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11964644 11964785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11965480 11965593 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11966251 11966316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11966987 11967091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11970670 11970816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11972872 11972997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 11974653 11974808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2184 nt):
ATGCGGCCCCTGCTGCTACTGGCCCTGCTGGGCTGGCTGCTGCTGGCCGAAGCGAAGGGCGACGCCAAGC
CGGAGGACAACCTTTTAGTCCTCACGGTGGCCACTAAGGAGACCGAGGGATTCCGTCGCTTCAAGCGCTC
AGCTCAGTTCTTCAACTACAAGATCCAGGCGCTTGGCCTAGGGGAGGACTGGAATGTGGAGAAGGGGACG
TCGGCAGGTGGAGGGCAGAAGGTCCGGCTGCTGAAGAAAGCTCTGGAGAAGCACGCAGACAAGGAGGATC
TGGTCATTCTCTTCGCAGACAGCTATGACGTGCTGTTTGCATCGGGGCCCCGGGAGCTCCTGAAGAAGTT
CCGGCAGGCCAGGAGCCAGGTGGTCTTCTCTGCTGAGGAGCTCATCTACCCAGACCGCAGGCTGGAGACC
AAGTATCCGGTGGTGTCCGATGGCAAGAGGTTCCTGGGCTCTGGAGGCTTCATCGGTTATGCCCCCAACC
TCAGCAAACTGGTGGCCGAGTGGGAGGGCCAGGACAGCGACAGCGATCAGCTGTTTTACACCAAGATCTT
CTTGGACCCGGAGAAGAGGGAGCAGATCAATATCACCCTGGACCACCGCTGCCGTATCTTCCAGAACCTG
GATGGAGCCTTGGATGAGGTCGTGCTCAAGTTTGAAATGGGCCATGTGAGAGCGAGGAACCTGGCCTATG
ACACCCTCCCGGTCCTGATCCATGGCAACGGGCCAACCAAGCTGCAGTTGAACTACCTGGGCAACTACAT
CCCGCGCTTCTGGACCTTCGAAACAGGCTGCACCGTGTGTGACGAAGGCTTGCGCAGCCTCAAGGGCATT
GGGGATGAAGCTCTGCCCACGGTCCTGGTCGGCGTGTTCATCGAACAGCCCACGCCGTTTGTGTCCCTGT
TCTTCCAGCGGCTCCTGCGGCTCCACTACCCCCAGAAACACATGCGACTTTTCATCCACAACCACGAGCA
GCACCACAAGGCTCAGGTGGAAGAGTTCCTGGCACAGCATGGCAGCGAGTACCAGTCTGTGAAGCTGGTG
GGCCCTGAGGTGCGGATGGCGAATGCAGATGCCAGGAACATGGGCGCAGACCTGTGCCGGCAGGACCGCA
GCTGCACCTACTACTTCAGCGTGGATGCTGACGTGGCCCTGACCGAGCCCAACAGCCTGCGGCTGCTGAT
CCAACAGAACAAGAACGTCATTGCCCCGCTGATGACCCGGCATGGGAGGCTGTGGTCGAACTTCTGGGGG
GCTCTCAGTGCAGATGGCTACTATGCCCGTTCCGAGGACTACGTGGACATTGTGCAGGGGCGGCGTGTTG
GTGTCTGGAATGTGCCCTATATTTCAAACATCTACTTGATCAAGGGCAGTGCCCTGCGGGGTGAGCTGCA
GTCCTCAGATCTCTTCCACCACAGCAAGCTGGACCCCGACATGGCCTTCTGTGCCAACATCCGGCAGCAG
GATGTGTTCATGTTCCTGACCAACCGGCACACCCTTGGCCATCTGCTCTCCCTAGACAGCTACCGCACCA
CCCACCTGCACAACGACCTCTGGGAGGTGTTCAGCAACCCCGAGGACTGGAAGGAGAAGTACATCCACCA
GAACTACACCAAAGCCCTGGCAGGGAAGCTGGTGGAGACGCCCTGCCCGGATGTCTATTGGTTCCCCATC
TTCACGGAGGTGGCCTGTGATGAGCTGGTGGAGGAGATGGAGCACTTTGGCCAGTGGTCTCTGGGCAACA
ACAAGGACAACCGCATCCAGGGTGGCTACGAGAACGTGCCGACTATTGACATCCACATGAACCAGATCGG
CTTTGAGCGGGAGTGGCACAAATTCCTGCTGGAGTACATTGCGCCCATGACGGAGAAGCTCTACCCCGGC
TACTACACCAGGGCCCAGTTTGACCTGGCCTTTGTCGTCCGCTACAAGCCTGATGAGCAGCCCTCACTGA
TGCCACACCATGATGCCTCCACCTTCACCATCAACATCGCCCTGAACCGAGTCGGGGTGGATTACGAGGG
CGGGGGCTGTCGGTTCCTGCGCTACAACTGTTCCATCCGAGCCCCAAGGAAGGGCTGGACCCTCATGCAC
CCTGGACGACTCACGCATTACCATGAGGGGCTCCCCACCACCAGGGGCACCCGCTACATCGCAGTCTCCT
TCGTCGATCCCTAA

Translation (727 aa):
MRPLLLLALLGWLLLAEAKGDAKPEDNLLVLTVATKETEGFRRFKRSAQFFNYKIQALGLGEDWNVEKGT
SAGGGQKVRLLKKALEKHADKEDLVILFADSYDVLFASGPRELLKKFRQARSQVVFSAEELIYPDRRLET
KYPVVSDGKRFLGSGGFIGYAPNLSKLVAEWEGQDSDSDQLFYTKIFLDPEKREQINITLDHRCRIFQNL
DGALDEVVLKFEMGHVRARNLAYDTLPVLIHGNGPTKLQLNYLGNYIPRFWTFETGCTVCDEGLRSLKGI
GDEALPTVLVGVFIEQPTPFVSLFFQRLLRLHYPQKHMRLFIHNHEQHHKAQVEEFLAQHGSEYQSVKLV
GPEVRMANADARNMGADLCRQDRSCTYYFSVDADVALTEPNSLRLLIQQNKNVIAPLMTRHGRLWSNFWG
ALSADGYYARSEDYVDIVQGRRVGVWNVPYISNIYLIKGSALRGELQSSDLFHHSKLDPDMAFCANIRQQ
DVFMFLTNRHTLGHLLSLDSYRTTHLHNDLWEVFSNPEDWKEKYIHQNYTKALAGKLVETPCPDVYWFPI
FTEVACDELVEEMEHFGQWSLGNNKDNRIQGGYENVPTIDIHMNQIGFEREWHKFLLEYIAPMTEKLYPG
YYTRAQFDLAFVVRYKPDEQPSLMPHHDASTFTINIALNRVGVDYEGGGCRFLRYNCSIRAPRKGWTLMH
PGRLTHYHEGLPTTRGTRYIAVSFVDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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