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Report for CCDS5442.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5442.1 Public Homo sapiens 7 BMPER 24 110 108 CCDS HistoryNCBI Gene:168667Re-query CCDS DB by CCDS ID:5442.1Re-query CCDS DB by GeneID:168667See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5442.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297161.6 ENSP00000297161.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297161.6Link to Ensembl Protein Viewer:ENSP00000297161.2Re-query CCDS DB by Nucleotide ID:ENST00000297161Re-query CCDS DB by Protein ID:ENSP00000297161
Original member Current member EBI ENST00000649409.2 ENSP00000497748.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000649409.2Link to Ensembl Protein Viewer:ENSP00000497748.1Re-query CCDS DB by Nucleotide ID:ENST00000649409Re-query CCDS DB by Protein ID:ENSP00000497748
Original member Current member NCBI NM_001365308.1 NP_001352237.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365308.1Link to Protein Sequence:NP_001352237.1Re-query CCDS DB by Nucleotide ID:NM_001365308Re-query CCDS DB by Protein ID:NP_001352237Link to BLAST:NP_001352237.1
Original member Current member NCBI NM_133468.5 NP_597725.1 Accepted alive Link to Nucleotide Sequence:NM_133468.5Link to Protein Sequence:NP_597725.1Re-query CCDS DB by Nucleotide ID:NM_133468Re-query CCDS DB by Protein ID:NP_597725Link to BLAST:NP_597725.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352237.1 685 Q8N8U9 685 100% 0 0
NP_597725.1 685 Q8N8U9 685 100% 0 0

Chromosomal Locations for CCDS 5442.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 33905614 33905746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33906818 33906903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33937289 33937388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33966479 33966561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33970329 33970419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 33974702 33974784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34046306 34046405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34051861 34051970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34055163 34055303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34058059 34058163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34062002 34062047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34078857 34079186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34085756 34086092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34143230 34143360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34153092 34153273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2058 nt):
ATGCTCTGGTTCTCCGGCGTCGGGGCTCTGGCTGAGCGTTACTGCCGCCGCTCGCCTGGGATTACGTGCT
GCGTCTTGCTGCTACTCAATTGCTCGGGGGTCCCCATGTCTCTGGCTTCCTCCTTCTTGACAGGTTCTGT
TGCAAAATGTGAAAATGAAGGTGAAGTCCTCCAGATTCCATTTATCACAGACAACCCTTGCATAATGTGT
GTCTGCTTGAACAAGGAAGTGACATGTAAGAGAGAGAAGTGCCCCGTGCTGTCCCGAGACTGTGCCCTGG
CCATCAAGCAGAGGGGAGCCTGTTGTGAACAGTGCAAAGGTTGCACCTATGAAGGAAATACCTATAACAG
CTCCTTCAAATGGCAGAGCCCGGCTGAGCCTTGTGTTCTACGCCAGTGCCAGGAGGGCGTTGTCACAGAG
TCTGGGGTGCGCTGTGTTGTTCATTGTAAAAACCCTTTGGAGCATCTGGGAATGTGCTGCCCCACATGTC
CAGGCTGTGTGTTTGAGGGTGTGCAGTATCAAGAAGGGGAGGAATTTCAGCCAGAAGGAAGCAAATGTAC
CAAGTGTTCCTGCACTGGAGGCAGGACACAATGTGTGAGAGAAGTCTGTCCCATTCTCTCCTGTCCCCAG
CACCTTAGTCACATACCCCCAGGACAGTGCTGCCCCAAATGTTTGGGTCAGAGGAAAGTGTTTGACCTCC
CTTTTGGGAGCTGCCTCTTTCGAAGTGATGTTTATGACAATGGATCCTCATTTCTGTACGATAACTGCAC
AGCTTGTACCTGCAGGGACTCTACTGTGGTTTGCAAGAGGAAGTGCTCCCACCCTGGTGGCTGTGACCAA
GGCCAGGAGGGCTGTTGTGAAGAGTGCCTCCTACGAGTGCCCCCAGAAGACATCAAAGTATGCAAATTTG
GCAACAAGATTTTCCAGGATGGAGAGATGTGGTCCTCTATCAATTGTACCATCTGTGCTTGTGTGAAAGG
CAGGACGGAGTGTCGCAATAAGCAGTGCATTCCCATCAGTAGCTGCCCACAGGGCAAAATTCTCAACAGA
AAAGGATGCTGTCCTATTTGCACTGAAAAGCCCGGCGTTTGCACGGTGTTTGGAGATCCCCACTACAACA
CTTTTGACGGTCGGACATTTAACTTTCAGGGGACGTGTCAGTACGTTTTGACAAAAGACTGCTCCTCCCC
TGCCTCGCCCTTCCAGGTGCTGGTGAAGAACGACGCCCGCCGGACACGCTCCTTCTCGTGGACCAAGTCG
GTGGAGCTGGTGCTGGGCGAGAGCAGGGTCAGCCTGCAGCAGCACCTCACCGTGCGCTGGAACGGCTCGC
GCATCGCGCTCCCCTGCCGCGCGCCACACTTCCACATCGACCTGGATGGCTACCTCTTGAAAGTGACCAC
CAAAGCAGGTTTGGAAATATCTTGGGATGGAGACAGTTTTGTAGAAGTCATGGCTGCGCCGCATCTCAAG
GGCAAGCTCTGTGGTCTTTGTGGCAACTACAATGGACATAAACGTGATGACTTAATTGGTGGAGATGGAA
ACTTCAAGTTTGATGTGGATGACTTTGCTGAATCTTGGAGGGTGGAGTCCAATGAGTTCTGCAACAGACC
TCAGAGAAAGCCAGTGCCTGAACTGTGTCAAGGGACAGTCAAGGTAAAGCTCCGGGCCCATCGAGAATGC
CAAAAGCTCAAATCCTGGGAGTTTCAGACCTGCCACTCGACTGTGGACTACGCCACTTTCTACCGGTCCT
GTGTGACAGACATGTGTGAATGTCCAGTCCATAAAAACTGTTATTGCGAGTCATTTTTGGCATATACCCG
GGCCTGCCAGAGAGAGGGCATCAAAGTCCACTGGGAGCCTCAGCAGAATTGTGCAGCCACCCAGTGTAAG
CATGGTGCTGTGTACGATACCTGTGGTCCGGGATGTATCAAGACGTGTGACAACTGGAATGAAATTGGTC
CATGCAACAAGCCGTGCGTTGCTGGGTGCCACTGTCCAGCAAACTTGGTCCTTCACAAGGGAAGGTGCAT
CAAGCCAGTCCTTTGTCCCCAGCGGTGA

Translation (685 aa):
MLWFSGVGALAERYCRRSPGITCCVLLLLNCSGVPMSLASSFLTGSVAKCENEGEVLQIPFITDNPCIMC
VCLNKEVTCKREKCPVLSRDCALAIKQRGACCEQCKGCTYEGNTYNSSFKWQSPAEPCVLRQCQEGVVTE
SGVRCVVHCKNPLEHLGMCCPTCPGCVFEGVQYQEGEEFQPEGSKCTKCSCTGGRTQCVREVCPILSCPQ
HLSHIPPGQCCPKCLGQRKVFDLPFGSCLFRSDVYDNGSSFLYDNCTACTCRDSTVVCKRKCSHPGGCDQ
GQEGCCEECLLRVPPEDIKVCKFGNKIFQDGEMWSSINCTICACVKGRTECRNKQCIPISSCPQGKILNR
KGCCPICTEKPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVKNDARRTRSFSWTKS
VELVLGESRVSLQQHLTVRWNGSRIALPCRAPHFHIDLDGYLLKVTTKAGLEISWDGDSFVEVMAAPHLK
GKLCGLCGNYNGHKRDDLIGGDGNFKFDVDDFAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHREC
QKLKSWEFQTCHSTVDYATFYRSCVTDMCECPVHKNCYCESFLAYTRACQREGIKVHWEPQQNCAATQCK
HGAVYDTCGPGCIKTCDNWNEIGPCNKPCVAGCHCPANLVLHKGRCIKPVLCPQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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