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Report for CCDS5040.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5040.1 Public Homo sapiens 6 POU3F2 24 110 108 CCDS HistoryNCBI Gene:5454Re-query CCDS DB by CCDS ID:5040.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5040.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000328345.8 ENSP00000329170.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000328345.8Link to Ensembl Protein Viewer:ENSP00000329170.5Re-query CCDS DB by Nucleotide ID:ENST00000328345Re-query CCDS DB by Protein ID:ENSP00000329170
Original member Current member NCBI NM_005604.4 NP_005595.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005604.4Link to Protein Sequence:NP_005595.2Re-query CCDS DB by Nucleotide ID:NM_005604Re-query CCDS DB by Protein ID:NP_005595Link to BLAST:NP_005595.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005595.2 443 P20265-1 443 100% 0 0

Chromosomal Locations for CCDS 5040.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 98834874 98836205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCGACCGCAGCGTCTAACCACTACAGCCTGCTCACCTCCAGCGCCTCCATCGTGCACGCCGAGCCGC
CC
GGCGGCATGCAGCAGGGCGCGGGGGGCTACCGCGAAGCGCAGAGCCTGGTGCAGGGCGACTACGGCGC
T
CTGCAGAGCAACGGACACCCGCTCAGCCACGCTCACCAGTGGATCACCGCGCTGTCCCACGGCGGCGGC
GGC
GGGGGCGGTGGCGGCGGCGGGGGGGGCGGGGGCGGCGGCGGGGGCGGCGGCGACGGCTCCCCGTGGT
CC
ACCAGCCCCCTGGGCCAGCCGGACATCAAGCCCTCGGTGGTGGTGCAGCAGGGCGGCCGCGGAGACGA
G
CTGCACGGGCCAGGCGCCCTGCAGCAGCAGCATCAGCAGCAGCAACAGCAACAGCAGCAGCAACAGCAG
CAA
CAGCAGCAGCAGCAGCAGCAACAGCGGCCGCCGCATCTGGTGCACCACGCCGCTAACCACCACCCGG
GA
CCCGGGGCATGGCGGAGCGCGGCGGCTGCAGCGCACCTCCCACCCTCCATGGGAGCGTCCAACGGCGG
C
TTGCTCTACTCGCAGCCCAGCTTCACGGTGAACGGCATGCTGGGCGCCGGCGGGCAGCCGGCCGGTCTG
CAC
CACCACGGCCTGCGGGACGCGCACGACGAGCCACACCATGCCGACCACCACCCGCACCCGCACTCGC
AC
CCACACCAGCAGCCGCCGCCCCCGCCGCCCCCGCAGGGTCCGCCTGGCCACCCAGGCGCGCACCACGA
C
CCGCACTCGGACGAGGACACGCCGACCTCGGACGACCTGGAGCAGTTCGCCAAGCAGTTCAAGCAGCGG
CGG
ATCAAACTGGGATTTACCCAAGCGGACGTGGGGCTGGCTCTGGGCACCCTGTATGGCAACGTGTTCT
CG
CAGACCACCATCTGCAGGTTTGAGGCCCTGCAGCTGAGCTTCAAGAACATGTGCAAGCTGAAGCCTTT
G
TTGAACAAGTGGTTGGAGGAGGCGGACTCGTCCTCGGGCAGCCCCACGAGCATAGACAAGATCGCAGCG
CAA
GGGCGCAAGCGGAAAAAGCGGACCTCCATCGAGGTGAGCGTCAAGGGGGCTCTGGAGAGCCATTTCC
TC
AAATGCCCCAAGCCCTCGGCCCAGGAGATCACCTCCCTCGCGGACAGCTTACAGCTGGAGAAGGAGGT
G
GTGAGAGTTTGGTTTTGTAACAGGAGACAGAAAGAGAAAAGGATGACCCCTCCCGGAGGGACTCTGCCG
GGC
GCCGAGGATGTGTACGGGGGGAGTAGGGACACTCCACCACACCACGGGGTGCAGACGCCCGTCCAGT
GA


Translation (443 aa):
MATAASNHYSLLTSSASIVHAEPPGGMQQGAGGYREAQSLVQGDYGALQSNGHPLSHAHQWITALSHGGG
G
GGGGGGGGGGGGGGGGGDGSPWSTSPLGQPDIKPSVVVQQGGRGDELHGPGALQQQHQQQQQQQQQQQQ
Q
QQQQQQQQRPPHLVHHAANHHPGPGAWRSAAAAAHLPPSMGASNGGLLYSQPSFTVNGMLGAGGQPAGL
H
HHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPPPQGPPGHPGAHHDPHSDEDTPTSDDLEQFAKQFKQR
R
IKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEEADSSSGSPTSIDKIAA
Q
GRKRKKRTSIEVSVKGALESHFLKCPKPSAQEITSLADSLQLEKEVVRVWFCNRRQKEKRMTPPGGTLP
G
AEDVYGGSRDTPPHHGVQTPVQ




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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