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Report for CCDS35777.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35777.1 Public Mus musculus 1 Itln1 23 108 98 CCDS HistoryNCBI Gene:16429Re-query CCDS DB by CCDS ID:35777.1Re-query CCDS DB by GeneID:16429See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35777.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043094.12 ENSMUSP00000043837.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043094.12Link to Ensembl Protein Viewer:ENSMUSP00000043837.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043094Re-query CCDS DB by Protein ID:ENSMUSP00000043837
Original member Current member NCBI NM_010584.3 NP_034714.1 Accepted alive Link to Nucleotide Sequence:NM_010584.3Link to Protein Sequence:NP_034714.1Re-query CCDS DB by Nucleotide ID:NM_010584Re-query CCDS DB by Protein ID:NP_034714Link to BLAST:NP_034714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034714.1 313 O88310 313 100% 0 0

Chromosomal Locations for CCDS 35777.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 171518241 171518393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171529121 171529224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171530494 171530614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171531034 171531192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171531506 171531753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171533366 171533464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 171534754 171534811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGACCCAACTGGGATTCCTGCTGTTTATCATGGTTGCTACCAGAGGTTGCAGTGCAGCTGAAGAGAACC
TGGACACCAACAGGTGGGGCAATTCTTTCTTTTCCTCTCTGCCCAGAAGCTGCAAGGAAATCAAGCAGGA
GCACACAAAGGCACAAGATGGTCTCTATTTCCTGCGCACGAAGAATGGTGTCATCTACCAGACCTTCTGT
GACATGACCACTGCAGGTGGTGGCTGGACCCTGGTGGCTAGTGTGCATGAGAACAACATGCGTGGGAAGT
GCACTGTGGGTGATCGCTGGTCCAGTCAGCAAGGCAACAGAGCTGACTACCCAGAGGGGGATGGCAACTG
GGCCAACTACAACACCTTTGGGTCTGCAGAGGCTGCCACAAGTGATGACTACAAGAACCCTGGCTACTTT
GACATCCAGGCTGAGAACCTGGGCATCTGGCACGTGCCCAACAAAAGCCCCCTGCACAACTGGAGGAAGA
GCTCCCTGCTGAGGTACCGCACCTTCACTGGCTTCCTGCAGCACTTGGGACATAATCTGTTTGGCCTCTA
CAAGAAGTACCCAGTGAAATACGGAGAAGGAAAGTGTTGGACTGACAATGGCCCAGCATTACCTGTGGTC
TATGACTTTGGTGATGCTCGGAAGACAGCCTCTTATTACTCCCCCTCTGGCCAGAGGGAATTTACTGCAG
GATATGTTCAGTTCAGAGTGTTTAATAATGAGAGAGCGGCCAGTGCCTTGTGTGCTGGCGTGAGGGTCAC
TGGATGTAATACTGAACATCACTGCATCGGTGGAGGAGGATTCTTCCCAGAAGGTAACCCCGTGCAGTGT
GGAGACTTTGCGTCATTTGATTGGGATGGATATGGAACTCACAATGGGTACAGCAGTAGCCGGAAGATAA
CTGAAGCAGCTGTGCTTCTGTTTTATCGCTGA

Translation (313 aa):
MTQLGFLLFIMVATRGCSAAEENLDTNRWGNSFFSSLPRSCKEIKQEHTKAQDGLYFLRTKNGVIYQTFC
DMTTAGGGWTLVASVHENNMRGKCTVGDRWSSQQGNRADYPEGDGNWANYNTFGSAEAATSDDYKNPGYF
DIQAENLGIWHVPNKSPLHNWRKSSLLRYRTFTGFLQHLGHNLFGLYKKYPVKYGEGKCWTDNGPALPVV
YDFGDARKTASYYSPSGQREFTAGYVQFRVFNNERAASALCAGVRVTGCNTEHHCIGGGGFFPEGNPVQC
GDFASFDWDGYGTHNGYSSSRKITEAAVLLFYR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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