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Report for CCDS25210.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25210.1 Public Mus musculus 11 Trim37 23 108 98 CCDS HistoryNCBI Gene:68729Re-query CCDS DB by CCDS ID:25210.1Re-query CCDS DB by GeneID:68729See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25210.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041282.12 ENSMUSP00000049057.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041282.12Link to Ensembl Protein Viewer:ENSMUSP00000049057.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041282Re-query CCDS DB by Protein ID:ENSMUSP00000049057
Original member Current member NCBI NM_197987.2 NP_932104.1 Accepted alive Link to Nucleotide Sequence:NM_197987.2Link to Protein Sequence:NP_932104.1Re-query CCDS DB by Nucleotide ID:NM_197987Re-query CCDS DB by Protein ID:NP_932104Link to BLAST:NP_932104.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_932104.1 961 Q6PCX9 961 100% 0 0

Chromosomal Locations for CCDS 25210.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 87127474 87127494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87129716 87129817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87137590 87137630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87140485 87140601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87143127 87143214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87145464 87145586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87146934 87147057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87149296 87149363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87159821 87159945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87163819 87163869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87166602 87166683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87167440 87167516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87177849 87178028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87182421 87182535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87184884 87185102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87186379 87186515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87190074 87190159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87196821 87197015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87201318 87201626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87205933 87206055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87206764 87206953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87209769 87209887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87216437 87216547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 87218252 87218334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2886 nt):
ATGGATGAGCAGAGTGTGGAGAGCATTGCTGAGGTTTTCCGATGTTTCATTTGTATGGAGAAATTGCGGG
ATGCTCGACTGTGTCCTCATTGCTCCAAGCTCTGTTGTTTCAGCTGTATTAGGCGCTGGCTGACAGAGCA
AAGAGCTCAGTGTCCTCACTGTCGTGCTCCACTCCAGCTACGGGAACTGGTGAACTGTCGTTGGGCGGAA
GAAGTGACACAGCAGCTTGACACTCTCCAGCTGTGTAGTCTCACCAAACATGAAGAAAATGAGAAAGACA
AATGTGAAAATCACCATGAAAAACTTAGTGTGTTTTGCTGGACTTGTAAGAAGTGTATCTGCCATCAGTG
TGCACTTTGGGGAGGAATGCATGGTGGACACACGTTTAAACCTTTGGCAGAAATTTATGAACAACATGTC
ACTAAAGTGAATGAAGAGGTAGCCAAACTTCGTCGACGTCTCATGGAGCTGATCAGCTTAGTTCAAGAAG
TGGAAAGAAATGTAGAAGCTGTAAGAAATGCAAAGGACGAGCGTGTTCGGGAAATTAGGAATGCGGTAGA
GATGATGATTGCACGACTAGATACACAGCTGAAGAATAAGCTCATAACTCTCATGGGTCAGAAGACATCT
CTTACTCAAGAAACGGAGCTGTTGGAATCTTTACTTCAGGAGGTAGAACATCAGTTGCGGTCTTGCAGTA
AGAGCGAGCTGATCTCCAAGAGCTCAGAGATCCTAATGATGTTCCAGCAAGTTCACCGAAAGCCCATGGC
ATCCTTTGTCACCACACCTGTCCCACCAGACTTTACCAGTGAATTGGTACCATCCTATGATTCAGCTACT
TTTGTTTTAGAGAACTTCAGCACTTTGCGGCAGAGAGCAGATCCTGTTTACAGTCCGCCTCTTCAAGTTT
CAGGACTTTGTTGGAGGTTAAAAGTTTACCCAGATGGAAATGGAGTTGTACGTGGCTATTATTTATCTGT
ATTTTTGGAACTATCGGCTGGCTTGCCTGAAACTTCCAAGTATGAATATCGTGTAGAAATGGTTCACCAG
TCGTGCAATGATCCTACAAAAAATATCATTCGAGAATTTGCATCTGACTTTGAAGTTGGAGAGTGCTGGG
GCTACAATAGGTTTTTTCGTTTGGATTTACTTGCAAACGAAGGATACTTGAACCGACAAAATGATACAGT
GATTTTAAGGTTTCAGGTGCGCTCACCAACATTTTTTCAAAAATGCCGGGATCAGCACTGGTATATTACT
CAGTTGGAAGCTGCACAGACTGGTTATATCCAACAAATAAACAATCTTAAAGAGAGACTGACTATTGAGC
TGTCCCGAACTCAGAAATCCAGAGATCTGTCACCACCAGATAATCATCTTAGCCCTCAAAATGATGATTC
TCCTGAGACACGAACTAAGAAAGCTGGGTCATGCTCTGACATGCTTCTGGAAGGCGGTCCTACTTGCGCT
TCTGTACGAGAGACCAAGGAAGATGAAGATGAGGAGGAGAAGATTCAGAATGAAGACTATCATCATGAGC
TCTCGGATGGAGATCTGGACCTGGATCTTGTTGGAGAAGATGAAGTGAATCACCTTGATGGCAGCAGCTC
TTCTGCTAGTTCTACAGCAACAAGCAACACAGAAGAAAACGATATTGATGAGGAGACCATGTCTGGGGAA
AATGATGTAGAATATAACAGTATGGAGCTGGAAGAGGGAGAGCTCATGGAAGATGCAGCTGCTGCAGGTC
CTCCAGGTAGTAGCCACAGCTATGTGGGTGCCAGTAGCAGAATGTCAAGAAGAACACATTTATGCTCTGC
AGCTACCAGTAGCTTACTAGACATTGATCCTTTAATCTTAATACATTTATTGGATCTTAAGGACCGGAGC
AGTATGGAAAACCTGTGGGGTTTACAGCCTCGCCCGTCTGCTTCACTGTTGCAGCCCACAGCATCATATT
CTCGAAAAGATAAAGATCAAAGGAAGCAGCAAGCGATGTGGCGTGTGCCCTCTGACCTAAAGATGCTGAA
AAGGCTCAAAACACAGATGGCTGAAGTCCGGTGTATGAAGACTGATGTGAAGACTACGCTGTCAGATATA
AAGGGCAGCAGTGTTGCTTCCACAGACATGCAGACAAACCTATTCTGTGCTGACCAGGCAGCTCTGACTA
CCTGTGGACCCGAAAACTCTGGTAGATTACAGGATTTGGGAATGGAGCTTCTAGCAAAGTCATCAGTGGC
TGGCTGTTACATACGAAACCCCACAAATAAGAAGAATTCCCCCAAGTCAGCTCGGGCCATAGCAGGCAGT
CTGTCACTCCGAAGAGCTGTGGACTCTGGAGAAAATAGCCGTTCAAAGGGAGACTGTCAGGTTCTGGCTG
AAGGCTCCTCGGGAAGCTCTCAGTCTGGGAGCAGACACAGCTCCCCCCGGGCTCTGACACACGGCATCAT
TGGGGATCTTCTGCCCAAAAGTGAAGACCGACAGTGCAAAGCCTTGGATTCTGACGCTGTGGTTGTTGCA
GTTTTCAATGGTTTACCTACTGTTGAGAAGAGAAGGAAAATGGTCACCTTGGGGACTAATGCAAAAGGAG
GTCGTCTGGAAGGAATGCAGATGGCAGATTTGGAAAGTCATTCTGAAGCTGGGGAGGTACAGCCCACACT
ACCTGAAGGAGCCTCAGCCGCCCCTGAGGAAGGAATGAGTAGTGACAGCGACATTGAATGTGACACTGAG
AACGAGGAGCAGGAAGAACACACCAGCATGGGCGCGTTCAACGATCCGTTCCTGGCTCAGCCCCCCGATG
AAGATTCACATTCCAGTTTTCCTGATGGTGAACAAATAGACCCTGAAAATCTCCACTTCAACCCTGATGA
AGGAGGTGGAAGGTAA

Translation (961 aa):
MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAE
EVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTFKPLAEIYEQHV
TKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMMIARLDTQLKNKLITLMGQKTS
LTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSAT
FVLENFSTLRQRADPVYSPPLQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQ
SCNDPTKNIIREFASDFEVGECWGYNRFFRLDLLANEGYLNRQNDTVILRFQVRSPTFFQKCRDQHWYIT
QLEAAQTGYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDSPETRTKKAGSCSDMLLEGGPTCA
SVRETKEDEDEEEKIQNEDYHHELSDGDLDLDLVGEDEVNHLDGSSSSASSTATSNTEENDIDEETMSGE
NDVEYNSMELEEGELMEDAAAAGPPGSSHSYVGASSRMSRRTHLCSAATSSLLDIDPLILIHLLDLKDRS
SMENLWGLQPRPSASLLQPTASYSRKDKDQRKQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKTTLSDI
KGSSVASTDMQTNLFCADQAALTTCGPENSGRLQDLGMELLAKSSVAGCYIRNPTNKKNSPKSARAIAGS
LSLRRAVDSGENSRSKGDCQVLAEGSSGSSQSGSRHSSPRALTHGIIGDLLPKSEDRQCKALDSDAVVVA
VFNGLPTVEKRRKMVTLGTNAKGGRLEGMQMADLESHSEAGEVQPTLPEGASAAPEEGMSSDSDIECDTE
NEEQEEHTSMGAFNDPFLAQPPDEDSHSSFPDGEQIDPENLHFNPDEGGGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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