NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS25568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25568.1 Public Mus musculus 11 Psmd12 23 108 98 CCDS HistoryNCBI Gene:66997Re-query CCDS DB by CCDS ID:25568.1Re-query CCDS DB by GeneID:66997See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 25568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000021063.12 ENSMUSP00000021063.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000021063.12Link to Ensembl Protein Viewer:ENSMUSP00000021063.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000021063Re-query CCDS DB by Protein ID:ENSMUSP00000021063
Original member Current member NCBI NM_025894.2 NP_080170.1 Accepted alive Link to Nucleotide Sequence:NM_025894.2Link to Protein Sequence:NP_080170.1Re-query CCDS DB by Nucleotide ID:NM_025894Re-query CCDS DB by Protein ID:NP_080170Link to BLAST:NP_080170.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080170.1 456 Q9D8W5 456 100% 0 0

Chromosomal Locations for CCDS 25568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 107479577 107479684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107485550 107485609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107485708 107485836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107486414 107486521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107488968 107489072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107491781 107491930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107492017 107492151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107493403 107493515 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107494630 107494804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107495688 107495765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 107497524 107497733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGGCGGACGGTGGCTCGGAGCGGGCCGATGGGCGCATTGTGAAGATGGAAGTGGACTACAGCGCCACGG
TGGACCAGCGCCTGCCTGAGTGCGAGAAGCTGGCCAAGGAAGGGCGGCTTCAAGAAGTCATCGAAACCCT
TCTCTCTCTAGAAAAGCAGACCCGGACTGCCTCTGACATGGTGTCCACGTCCCGCATCTTGGTTGCAGTA
GTGAAAATGTGCTATGAGGCTAAAGAATGGGACTTACTTAATGAAAATATTATGCTTCTGTCAAAACGAC
GGAGTCAGTTAAAACAAGCAGTTGCAAAAATGGTTCAGCAGTGCTGTACTTACGTGGAGGAGATCACAGA
CCTGCCAGTCAAGCTGCGATTGATTGATACTCTGCGGATGGTTACAGAAGGAAAGATTTATGTTGAAATT
GAGCGTGCTCGGCTGACTAAAACCTTAGCAACTATTAAAGAGCAAAATGGCGATGTGAAAGAGGCTGCCT
CCATCCTTCAAGAGTTACAGGTGGAAACCTATGGGTCCATGGAGAAGAAGGAGCGAGTGGAATTCATTCT
GGAGCAGATGAGACTCTGCCTAGCTGTGAAGGATTACATTCGCACACAGATCATTAGCAAAAAAATTAAT
ACCAAATTCTTCCAAGAAGAAAACACAGAGAACTTGAAGTTGAAGTACTATAACTTAATGATTCAGCTGG
ATCAGCACGAGGGGTCCTATCTGTCCATCTGCAAACACTACAGAGCCATCTATGACACTCCCTGCATTCA
GGCAGAAAGTGACAAGTGGCAGCAGGCTCTGAAAAGTGTTGTTCTCTATGTTATCCTGGCTCCTTTTGAC
AATGAGCAATCAGATTTGGTTCACCGGATAAGCAGTGACAAGAAGCTGGAAGAAATTCCCAAATACAAGG
ATCTGCTGAAGCTTTTTACCACCATGGAGCTGATGCGCTGGTCCACTCTTGTTGAGGACTATGGGGTGGA
GCTGCGAAAAGGCTCCTCAGAGACCCCGGCGACTGACGTTTTCAGCTCTACAGAAGAAGGGGAAAAGAGG
TGGAAAGACTTGAAGAGCAGAGTGGTGGAGCACAACATCAGAATTATGGCCAAGTACTACACTCGGATAA
CAATGAAAAGGATGGCACAACTTCTGGATCTCTCTGTGGATGAGTCAGAGGCTTTCCTCTCGAATCTAGT
CGTTAACAAGACCATCTTTGCTAAAGTAGACAGGTTGGCTGGAGTCATCAACTTCCAGAGACCCAAGGAT
CCAAATAATTTATTAAATGACTGGTCTCAGAAACTGAACTCGCTGATGTCTCTGGTTAACAAAACGACAC
ACCTCATAGCCAAAGAGGAGATGATACATAATCTACAATGA

Translation (456 aa):
MADGGSERADGRIVKMEVDYSATVDQRLPECEKLAKEGRLQEVIETLLSLEKQTRTASDMVSTSRILVAV
VKMCYEAKEWDLLNENIMLLSKRRSQLKQAVAKMVQQCCTYVEEITDLPVKLRLIDTLRMVTEGKIYVEI
ERARLTKTLATIKEQNGDVKEAASILQELQVETYGSMEKKERVEFILEQMRLCLAVKDYIRTQIISKKIN
TKFFQEENTENLKLKYYNLMIQLDQHEGSYLSICKHYRAIYDTPCIQAESDKWQQALKSVVLYVILAPFD
NEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVEDYGVELRKGSSETPATDVFSSTEEGEKR
WKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKD
PNNLLNDWSQKLNSLMSLVNKTTHLIAKEEMIHNLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH