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Report for CCDS36946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36946.1 Public Mus musculus 14 Defb43 23 108 98 CCDS HistoryNCBI Gene:654458Re-query CCDS DB by CCDS ID:36946.1Re-query CCDS DB by GeneID:654458See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100491.1 ENSMUSP00000098060.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100491.1Link to Ensembl Protein Viewer:ENSMUSP00000098060.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100491Re-query CCDS DB by Protein ID:ENSMUSP00000098060
Original member Current member NCBI NM_001039121.1 NP_001034210.1 Accepted alive Link to Nucleotide Sequence:NM_001039121.1Link to Protein Sequence:NP_001034210.1Re-query CCDS DB by Nucleotide ID:NM_001039121Re-query CCDS DB by Protein ID:NP_001034210Link to BLAST:NP_001034210.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034210.1 69 Q30KM9 69 100% 0 0

Chromosomal Locations for CCDS 36946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 63011810 63011867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 63017778 63017929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (210 nt):
ATGAGGGTCCTGTTCTCCATCCTGGGGGTCCTCACCTTGTTATCCATAGTTCCTCTGGCCAGGAGCTTCC
TTGAGAATCAGGACTGTTCAAAGCACCGCCACTGCAGGATGAAGTGCAAAGCTAACGAATACGCCGTCAG
ATACTGCGAGGACTGGACCATCTGCTGTCGGGTGAAGAAGAAGGAATCCAAGAAGAAGAAGATGTGGTGA

Translation (69 aa):
MRVLFSILGVLTLLSIVPLARSFLENQDCSKHRHCRMKCKANEYAVRYCEDWTICCRVKKKESKKKKMW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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