NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37296.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37296.1 Public Mus musculus 16 Liph 23 108 98 CCDS HistoryNCBI Gene:239759Re-query CCDS DB by CCDS ID:37296.1Re-query CCDS DB by GeneID:239759See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37296.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060673.7 ENSMUSP00000062310.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060673.7Link to Ensembl Protein Viewer:ENSMUSP00000062310.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000060673Re-query CCDS DB by Protein ID:ENSMUSP00000062310
Original member Current member NCBI NM_001083894.1 NP_001077363.1 Accepted alive Link to Nucleotide Sequence:NM_001083894.1Link to Protein Sequence:NP_001077363.1Re-query CCDS DB by Nucleotide ID:NM_001083894Re-query CCDS DB by Protein ID:NP_001077363Link to BLAST:NP_001077363.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077363.1 451 Q8CIV3-1 451 100% 0 0

Chromosomal Locations for CCDS 37296.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 21956090 21956177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21958781 21958954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21962145 21962256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21965954 21966049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21967985 21968152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21974058 21974147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21976233 21976334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21981336 21981444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21983901 21984268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 21995321 21995369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1356 nt):
ATGCTGAGGCTATGTTTTTTCATCAGTTTCATGTGCTTGGTGAAATCAGACACGGATGAAACATGCCCGT
CCTTCACCAGACTGAGCTTCCACAGCGCGGTGGTTGGTACAGGACTCTCCGTGAGACTGATGCTCTACAC
ACAGAGAGACCAGACCTGTGCACAGATCATCAACTCCACAGCTCTGGGGAGCTTAAATGTGACCAAGAAA
ACCACTTTTATAATCCACGGTTTCCGGCCAACAGGCTCCCCTCCGGTTTGGATAGAGGAGCTGGTACAGA
GTTTGATCAGTGTACAAGAGATGAATGTAGTGGTTGTTGATTGGAATCGAGGAGCGACAACTGTGATATA
CCCCCATGCGTCTAGCAAGACCAGACAAGTAGCTTCTATTTTGAAGGAATTTATTGACCAGATGTTGGTC
AAAGGAGCTTCTCTGGACAACATTTACATGATTGGAGTAAGTCTAGGAGCCCACATAGCTGGATTTGTTG
GCGAGTCGTATGAGGGGAAGCTGGGGAGAGTCACAGGTCTTGACCCTGCAGGCCCTTTATTCAACGGGAG
ACCTCCTGAGGAGAGATTAGACCCCAGCGACGCACTGTTCGTGGACGTCATCCACTCTGACACTGACGCA
CTAGGCTACAAGGAAGCCCTAGGACACATAGACTTCTACCCGAATGGAGGACTAGATCAACCCGGTTGCC
CCAAGACAATATTTGGAGGTATAAAGTACTTCAAGTGTGACCACCAGATGTCCGTCTACCTGTACCTTGC
ATCCCTGCAAAATAACTGCTCCATCACGGCCTATCCCTGCGACTCCTATCGGGATTATAGGAATGGCAAG
TGTGTCAGCTGTGGCGCTGGACAAATTGTGCCATGTCCCCGTGTAGGCTACTATGCTGACAGCTGGAAAG
AGTACTTATGGGACAGAGATCCTCCGATGACGAAGGCGTTCTTCGACACAGCTGAGACAAAGCCATACTG
CATGTATCATTATTTTGTGGACATTGTATCTTGGAACAAGAGCGTAAGAAGAGGGTTTATTACAATCAAA
CTGAGAGGCGAAGATGGCAATATCACAGAATCCAAAATCGATCATGAGCCATCTGCATTTGAGAAATACC
ATCAAGTGAGTCTCCTCGCAAGATTTAATCGAGATCTGGATAAGGTGGCAGAGATTTCCTTGTTGTTCTC
CACAGGGTCTGTAGTGGGCCCAAAGTACAAGCTCAGGGTCCTGCAGATGAAGCTGAGGTCTCTGGCCCAT
CCAGACAGGCCTCACTTGTGTCGATATGATCTCGTCCTTATGGAGAATGTTGAGACATCCTTCCAACCTA
TCCTGTGCTCTCAGCAGCAGATGTAG

Translation (451 aa):
MLRLCFFISFMCLVKSDTDETCPSFTRLSFHSAVVGTGLSVRLMLYTQRDQTCAQIINSTALGSLNVTKK
TTFIIHGFRPTGSPPVWIEELVQSLISVQEMNVVVVDWNRGATTVIYPHASSKTRQVASILKEFIDQMLV
KGASLDNIYMIGVSLGAHIAGFVGESYEGKLGRVTGLDPAGPLFNGRPPEERLDPSDALFVDVIHSDTDA
LGYKEALGHIDFYPNGGLDQPGCPKTIFGGIKYFKCDHQMSVYLYLASLQNNCSITAYPCDSYRDYRNGK
CVSCGAGQIVPCPRVGYYADSWKEYLWDRDPPMTKAFFDTAETKPYCMYHYFVDIVSWNKSVRRGFITIK
LRGEDGNITESKIDHEPSAFEKYHQVSLLARFNRDLDKVAEISLLFSTGSVVGPKYKLRVLQMKLRSLAH
PDRPHLCRYDLVLMENVETSFQPILCSQQQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH