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Report for CCDS37419.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37419.1 Public Mus musculus 16 Zbtb21 23 108 98 CCDS HistoryNCBI Gene:114565Re-query CCDS DB by CCDS ID:37419.1Re-query CCDS DB by GeneID:114565See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37419.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052089.8 ENSMUSP00000052127.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052089.8Link to Ensembl Protein Viewer:ENSMUSP00000052127.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000052089Re-query CCDS DB by Protein ID:ENSMUSP00000052127
Original member Current member NCBI NM_001081685.2 NP_001075154.1 Accepted alive Link to Nucleotide Sequence:NM_001081685.2Link to Protein Sequence:NP_001075154.1Re-query CCDS DB by Nucleotide ID:NM_001081685Re-query CCDS DB by Protein ID:NP_001075154Link to BLAST:NP_001075154.1

Chromosomal Locations for CCDS 37419.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 97949881 97950869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97951470 97953093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 97956758 97956829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2685 nt):
ATGATGCACAGTGTACAGCGGGCTCACAAACACTCGGGAGAGGAAGAGAGAAGAAAGATGTGTGCTTGCC
AGATAAAGTGCAGGATGGAGGGACTGCTGCATTACATCAACCCAGCACATGCTATCTCTCTGCTCAGTGC
CCTCAATGAGGAGCGCCTCAAGGGACAGCTGTGTGACGTGCTCCTGATTGTTGGGGACCAGAAATTCCGA
GCTCATAAGAACGTCTTGGCTGCCAGCAGTGAGTACTTCCAGAGTTTATTCACGAATAAGGAGAACGAGG
CACAGACTGTCTTTCAGCTGGACTTCTGTGAGCCTGACGCTTTTGACAACGTTCTGAACTACATTTACTC
TTCTTCCCTTTTTGTGGAGAAGGGCAGCCTTGCTGCTGTGCAGGAGCTGGGGTATAGCCTTGGTATCTCC
TTCCTGACCAACATCGTTGCCAAAGCCCCTCAGGCTCCTTTTCCAGCCTGTCCCAACAGGAAAAGAGTGC
CAGTGGAAGATGATGAAACCAGCTCTCAAAAGCGAAGTGTCATTGTGTGTCAGGGCAGAAGTGAAGTGCC
AGGGAAAGCCAGTGGTCCAGCCATGCAGGACCTCAGCCATACTGCCCGGGCCTCCCCCAGTGCTTCAGTC
AAGACCACCATCAGTAAGCCACATGTGGCCAAGCCGCCAGAGCAGCTTCATAGTCTGCCCTTAACTGAAA
AGAGCTGGACAAAGGATAGTGCTGCAGTATATGCAAAGTCTCTGGAACAGGCTGGGGCTTTGGATGATCC
TAATAGGGGCAGTTTGGTAAAGAGAAATACAGTCCTGCCCCCAAAGCCTTCACAGGACAGGGAGGCCACA
GATGATAAACCAGGGGTGAGCAGCCAGCTTCCCAAGGGGAAAGCTATAGAGCTGGCTCTGAAGAGACCAC
GGCCCCCTGTTCTGTCTCTTCATAGCTCATCAGAGACTCCATATCTCCTAAAAGAAACTAGCAAAGGAGG
CGGTCAGGGAGAGGATAGGAACTTGCTCTACTACTCTAAGCTAGGGCTGGTGGTCCCTTCTGGTGGGCCT
GCTTCTGCAAACCAGAGCATTGACAGAAGTGGCCCACTAGTGAAAAGCCTCCTCAGGCGGTCACTGTCTA
TGGACAGCCAGGTTCCTGTTTACTCCCCCTCCATAGATTTGAAGTCATCCCAGGGATCATCCACAGCGGC
AAATGAGGCACCGGGTAGTGTGTTCTGTTCGATGTCTCAAAAGTCATCTTTAAAAGATTGCAGTGAAAAA
AAAGCTCTGGATGACAGGCCTCAAGTGCTCCAGCCTCATCGCCTCAGGTCCTTTAGTGCTTCCCAGTCAA
CAGACAGGGAGGAAGCCTCCCCTGTGACTGAGGTACGCATTAAGACGGAACCCAGCAGCCCACTGTCAGA
CCCCTCAGACATCATCCGGGTCACTGTGGGAGGAGACGCAGCAGCAGCAGCAGTAGCAGCAGCAGCAGCA
GCAGCAGCTACGAGAGACCTGCCCCTCAAAACAGAGGAAGACCAGAGAGATATGAGCAGACTCCCAGCAA
AGAGAAGGTTCCAGACAGACAGAAGGTCACCCTTGAAGAAGGCAAAGGCAAATGAACACGGGCCTGCTGT
CTCAGAAGAGAACTGTGAAGAGGGCAGGAGCCCTCCTTCCCTTGACAGCAACTTCCCAGATTCTGACTTA
AACAGAGAGGAGTTTGAGCAAGGCAACCACGAGCGCTTGTGCCGGAACGCCACCGTTTGCCCTTACTGCA
GCCTCAGGTTCTTCTCTCCCGCACTGAAGCAGGAACATGAGGACAGGTGTGAGTACAAAAAGCTGACTTG
CCTGGAGTGCATGCGCACCTTCAAGTCCTCCTTCAGCATCTGGCGGCACCAGGTAGAAGTGCATAACCAG
AACAACATGGCTTTAGCAGAGAACTTCGCCCTGGCCACCCTGGACCACAACGGTGAAGTGGCAGCCGCTT
CCAGGCCTCAGACTGAGCCCAGCAAGGTAAACCATGTGGCCACTCCAAAAGAGGATACAGCATTTAGCGA
CTCTTCAGAGCAAGTGAACTTTGATTCTGAGGATTCCTCCTGCCTCCCTGAAGACTTGAGTCTTTCAAAG
CAACTGAAAGTCCAAGTCAAAGAGGAGCCTGTGGAGGAGGCAGAGGAGGAGGCTCCTGAGGCTAGTGCAG
CTCCCAGGGAGGCTGGCCCCAGCAAGGAGACCGGCCTATGGCCCTGTGAGAAATGCGGAAAGATGTTCAC
GGCACACAAGCAGCTGGAGCGGCACCAGGAGCTGCTGTGTTCTGTGAAGCCCTTCATCTGCCACGTATGC
TACAAAGCCTTCCGTACCAACTTCCGACTCTGGAGTCACTTCCAGACCCACATGTCTCAGGCTACAGAGG
AGCCTGTGCAGAAAGAATCAGAGGTGTGTCCTGTGCCCACAAACTCCCCCTCCCCACCACCTCTGCCACC
TCCGCCACCCTTGCCCAAGATTCAGCCCCTGGAGCCAGACAGCCCCACAGGCCTGCCTGAGAACCCAACC
CCAGCTACAGAGAAGCTGTTTGCACCCCAGGAGTCAGATACCCTCTTCTACCACGCCCCACCCCTTTCAG
CAATCACATTTAAAAGACAGTTCATGTGCAAGCTCTGCCATAGGACATTCAAGACGGCCTTCAGTCTTTG
GAGTCATGAGCAGACACACAATTAA

Translation (894 aa):
MMHSVQRAHKHSGEEERRKMCACQIKCRMEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFR
AHKNVLAASSEYFQSLFTNKENEAQTVFQLDFCEPDAFDNVLNYIYSSSLFVEKGSLAAVQELGYSLGIS
FLTNIVAKAPQAPFPACPNRKRVPVEDDETSSQKRSVIVCQGRSEVPGKASGPAMQDLSHTARASPSASV
KTTISKPHVAKPPEQLHSLPLTEKSWTKDSAAVYAKSLEQAGALDDPNRGSLVKRNTVLPPKPSQDREAT
DDKPGVSSQLPKGKAIELALKRPRPPVLSLHSSSETPYLLKETSKGGGQGEDRNLLYYSKLGLVVPSGGP
ASANQSIDRSGPLVKSLLRRSLSMDSQVPVYSPSIDLKSSQGSSTAANEAPGSVFCSMSQKSSLKDCSEK
KALDDRPQVLQPHRLRSFSASQSTDREEASPVTEVRIKTEPSSPLSDPSDIIRVTVGGDAAAAAVAAAAA
AAATRDLPLKTEEDQRDMSRLPAKRRFQTDRRSPLKKAKANEHGPAVSEENCEEGRSPPSLDSNFPDSDL
NREEFEQGNHERLCRNATVCPYCSLRFFSPALKQEHEDRCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQ
NNMALAENFALATLDHNGEVAAASRPQTEPSKVNHVATPKEDTAFSDSSEQVNFDSEDSSCLPEDLSLSK
QLKVQVKEEPVEEAEEEAPEASAAPREAGPSKETGLWPCEKCGKMFTAHKQLERHQELLCSVKPFICHVC
YKAFRTNFRLWSHFQTHMSQATEEPVQKESEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLPENPT
PATEKLFAPQESDTLFYHAPPLSAITFKRQFMCKLCHRTFKTAFSLWSHEQTHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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