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Report for CCDS29597.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29597.1 Public Mus musculus 19 Ms4a7 23 108 98 CCDS HistoryNCBI Gene:109225Re-query CCDS DB by CCDS ID:29597.1Re-query CCDS DB by GeneID:109225See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29597.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056035.8 ENSMUSP00000054830.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056035.8Link to Ensembl Protein Viewer:ENSMUSP00000054830.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000056035Re-query CCDS DB by Protein ID:ENSMUSP00000054830
Original member Current member NCBI NM_001025610.4 NP_001020781.1 Accepted alive Link to Nucleotide Sequence:NM_001025610.4Link to Protein Sequence:NP_001020781.1Re-query CCDS DB by Nucleotide ID:NM_001025610Re-query CCDS DB by Protein ID:NP_001020781Link to BLAST:NP_001020781.1

Chromosomal Locations for CCDS 29597.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 11321517 11321582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11322299 11322400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11324422 11324628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11327925 11328050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 11333207 11333353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGCGTCTACAGCTTGGCACCAAGAACATTGGGTGGGACTGCTTTCCAAAGGACATCATTATCCACAAAA
GAGAGAAAACTGGACATACATATGAAAAAGAAGATGACCTGCTGATTGGAGTGCCTAGTGAAGCCACAGT
TCTTGGAACCATCCAGCTACTATGTGCCCTGATACTTGCAAGCTTTGGGGGCATTTTGGTGTCAGCTTCC
TACTTCAACCCAGAAGTTTCCACCACTTTGATATCTGGATACCTGTTTATTGGATCCCTCTGTGCACTGA
GCAGCCTGGCCTCCAATGTAGCAAGCTCTGTTGTTGCCGTCATTGGCCTCTTCCTCTTCACCTATTGTCT
GATAGCCCTGGGGAGTGCTTTCCCACACTGTAACTCAGAAAAGAAATTCCTGTCCTTATTGTCTTACTTG
AAATCCCACCATTGGAAGAATGAAGACAAGAACTGTTACCTGGCTTATGTCGGTGCTATGAGTGCTCTGG
GGATGATGCTTCTCTTCACTGTGCTGGAGGTTTTCCTAGCTGGATACAGTTCTATCTTTTGGTGGAAGCA
AGTCTACTCCAACAAACCTGGGGGTACATTTTTCTTGCCTCAATCACAAGATCATACCCAACTTGTTAAA
AGCAATTTGTTGCAATAA

Translation (215 aa):
MRLQLGTKNIGWDCFPKDIIIHKREKTGHTYEKEDDLLIGVPSEATVLGTIQLLCALILASFGGILVSAS
YFNPEVSTTLISGYLFIGSLCALSSLASNVASSVVAVIGLFLFTYCLIALGSAFPHCNSEKKFLSLLSYL
KSHHWKNEDKNCYLAYVGAMSALGMMLLFTVLEVFLAGYSSIFWWKQVYSNKPGGTFFLPQSQDHTQLVK
SNLLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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