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Report for CCDS20510.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20510.1 Public Mus musculus 6 Clec4a2 23 108 98 CCDS HistoryNCBI Gene:26888Re-query CCDS DB by CCDS ID:20510.1Re-query CCDS DB by GeneID:26888See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20510.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041779.12 ENSMUSP00000045781.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041779.12Link to Ensembl Protein Viewer:ENSMUSP00000045781.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041779Re-query CCDS DB by Protein ID:ENSMUSP00000045781
Original member Current member EBI ENSMUST00000161365.7 ENSMUSP00000124615.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161365.7Link to Ensembl Protein Viewer:ENSMUSP00000124615.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161365Re-query CCDS DB by Protein ID:ENSMUSP00000124615
Original member NCBI NM_001170332.1 NP_001163803.1 Updated not alive Link to Nucleotide Sequence:NM_001170332.1Link to Protein Sequence:NP_001163803.1Re-query CCDS DB by Nucleotide ID:NM_001170332Re-query CCDS DB by Protein ID:NP_001163803
Current member NCBI NM_001170332.2 NP_001163803.1 Accepted alive Link to Nucleotide Sequence:NM_001170332.2Link to Protein Sequence:NP_001163803.1Re-query CCDS DB by Nucleotide ID:NM_001170332Re-query CCDS DB by Protein ID:NP_001163803Link to BLAST:NP_001163803.1
Original member NCBI NM_011999.4 NP_036129.1 Updated not alive Link to Nucleotide Sequence:NM_011999.4Link to Protein Sequence:NP_036129.1Re-query CCDS DB by Nucleotide ID:NM_011999Re-query CCDS DB by Protein ID:NP_036129
Current member NCBI NM_011999.5 NP_036129.1 Accepted alive Link to Nucleotide Sequence:NM_011999.5Link to Protein Sequence:NP_036129.1Re-query CCDS DB by Nucleotide ID:NM_011999Re-query CCDS DB by Protein ID:NP_036129Link to BLAST:NP_036129.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001163803.1 238 Q9QZ15 238 100% 0 0
NP_036129.1 238 Q9QZ15 238 100% 0 0

Chromosomal Locations for CCDS 20510.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 123123588 123123669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123124970 123125086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123127952 123128053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123139251 123139408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123140656 123140768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 123142363 123142507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (717 nt):
ATGGCTTCAGAAATCACTTATGCAGAAGTGAAGTTCAAGAATGAATCCAACTCCTTGCACACCTACTCAG
AATCTCCTGCAGCTCCCAGAGAGAAACCTATCCGTGATCTAAGAAAGCCTGGTTCCCCCTCACTGCTTCT
TACATCCCTGATGCTACTTCTCCTGCTGCTGGCAATCACATTCTTAGTTGCTTTTATCATTTATTTTCAA
AAGTACTCTCAACTTCTTGAAGAAAAAAAAGCTGCAAAAAATATAATGCACAATGAATTGAACTGCACAA
AAAGTGTTTCACCCATGGAAGACAAAGTCTGGAGCTGTTGCCCAAAGGATTGGAGGCTATTTGGTTCCCA
CTGCTACTTGGTTCCCACAGTTTCTTCATCAGCATCTTGGAACAAGAGTGAGGAGAACTGCTCCCGCATG
GGTGCTCATCTAGTGGTGATCCAAAGCCAGGAAGAGCAGGATTTCATCACTGGGATCTTGGACACTCATG
CTGCTTATTTTATAGGGTTGTGGGATACAGGCCATCGGCAATGGCAATGGGTTGATCAGACACCATATGA
AGAAAGTATCACATTCTGGCACAATGGTGAGCCCAGCAGTGGCAATGAAAAATGTGCTACAATAATTTAC
CGTTGGAAGACTGGATGGGGCTGGAACGATATCTCTTGCAGTCTTAAACAGAAGTCAGTTTGTCAGATGA
AGAAAATAAACTTATGA

Translation (238 aa):
MASEITYAEVKFKNESNSLHTYSESPAAPREKPIRDLRKPGSPSLLLTSLMLLLLLLAITFLVAFIIYFQ
KYSQLLEEKKAAKNIMHNELNCTKSVSPMEDKVWSCCPKDWRLFGSHCYLVPTVSSSASWNKSEENCSRM
GAHLVVIQSQEEQDFITGILDTHAAYFIGLWDTGHRQWQWVDQTPYEESITFWHNGEPSSGNEKCATIIY
RWKTGWGWNDISCSLKQKSVCQMKKINL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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