NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51916.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51916.1 Public Mus musculus 6 Tex52 23 108 98 CCDS HistoryNCBI Gene:71149Re-query CCDS DB by CCDS ID:51916.1Re-query CCDS DB by GeneID:71149See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51916.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100926.3 ENSMUSP00000098486.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100926.3Link to Ensembl Protein Viewer:ENSMUSP00000098486.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100926Re-query CCDS DB by Protein ID:ENSMUSP00000098486
Original member Current member NCBI NM_027697.1 NP_081973.1 Accepted alive Link to Nucleotide Sequence:NM_027697.1Link to Protein Sequence:NP_081973.1Re-query CCDS DB by Nucleotide ID:NM_027697Re-query CCDS DB by Protein ID:NP_081973Link to BLAST:NP_081973.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081973.1 308 Q3TTI8-1 308 100% 0 0

Chromosomal Locations for CCDS 51916.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 128375519 128375599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128379427 128379977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 128384694 128384988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (927 nt):
ATGGCCAACATCCCGAAGAAAACATCCCTCCAAAAGTCAAGCCTGAGCCAAGTATCTCGTACCAGGGAGC
CTTTCCTGAAGATGATCCATGCCAAAGAATCCTCCCCAATCTATCAGACTTGGACTCAGCGTGAGTTCCT
CCTCCCCAAAGAGACCAAGGAGTTCCCGGGCTTCACCCTACAAGACTACCACAAGCTGGCCCTGAAGCAG
CCACCATGCACAGAGTTGAAGTCTAAGGTGCGTCACCAGGTACTCTATCCTAGTAAGGATGCAGCCGAGC
ACACCTGGGGCTTTCACACGTGGCTTGATGTGGGACGTTTGCCTGCTACCTTTCCCACCAGACCGGACGT
ACCCTATGACAGTAACGTCTGGCGCCATTTGACTCACGCCAATGCCCACCGTCTCCCTGCTGCGCAGCCT
GGCATCCCTCCGCCCTCCTGGATGGGCCCACACAGCTTCCTGTCCTTCATCAGTGCTAGCCCCATAGTCG
TGGACTTGAAAAGAAGGAAGCAGATAATCGTAAGAACAGTGAAGGAGCTGAAGGAAGTGGAGAAACTCAA
GCTGAGGAGCGAACTAAGGGCCCCTCCCCTCGATGCCAATGGCAACATCCTACCTCCGCCAAACTTCAAG
AAGTACCAGTACATATCTACTGGTGGAAGGCTTGTGCCTTGGGGCCTCCAGTTCCTACCCAACCCAATTC
CCAATAACATCTGCAAGAGCTGGCCCTGCCCAAATCATCAGCCTCATTACCAGGAAAAGGTCCTGAAACT
GGCTCGGCTGCCCACGGTGCCCCTGAGCAAAGACCTTGTGAAGGACTACCAAGCCCTGATAAAAGACCGG
CTTGCCCTACCTGTCCACTACCTATCCAAGGCACGACCTGCTAAAACACCAGAGGGAAAGAGAAAAAGGA
GACCTGGATATGTCTGA

Translation (308 aa):
MANIPKKTSLQKSSLSQVSRTREPFLKMIHAKESSPIYQTWTQREFLLPKETKEFPGFTLQDYHKLALKQ
PPCTELKSKVRHQVLYPSKDAAEHTWGFHTWLDVGRLPATFPTRPDVPYDSNVWRHLTHANAHRLPAAQP
GIPPPSWMGPHSFLSFISASPIVVDLKRRKQIIVRTVKELKEVEKLKLRSELRAPPLDANGNILPPPNFK
KYQYISTGGRLVPWGLQFLPNPIPNNICKSWPCPNHQPHYQEKVLKLARLPTVPLSKDLVKDYQALIKDR
LALPVHYLSKARPAKTPEGKRKRRPGYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH