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Report for CCDS90455.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90455.1 Public Mus musculus 8 Pla2g15 23 108 98 CCDS HistoryNCBI Gene:192654Re-query CCDS DB by CCDS ID:90455.1Re-query CCDS DB by GeneID:192654See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90455.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000212963.1 ENSMUSP00000148565.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000212963.1Link to Ensembl Protein Viewer:ENSMUSP00000148565.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000212963Re-query CCDS DB by Protein ID:ENSMUSP00000148565
Original member Current member NCBI NM_001357319.1 NP_001344248.1 Accepted alive Link to Nucleotide Sequence:NM_001357319.1Link to Protein Sequence:NP_001344248.1Re-query CCDS DB by Nucleotide ID:NM_001357319Re-query CCDS DB by Protein ID:NP_001344248Link to BLAST:NP_001344248.1

Chromosomal Locations for CCDS 90455.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 106150487 106150613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106154868 106155024 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106160163 106160281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106160581 106160679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106161209 106161308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 106162825 106162933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGGATCGCCATCTCTGCACCTGTCGCGAGACCCAGCTCCGGAGTGGCCTCCTGTTACCTCTGTTTCTAC
TAATGATGCTGGCAGACCTGACGCTCCCGGCCCAACGTCACCCCCCGGTGGTGCTGGTGCCTGGTGATTT
GGGTAACCAGTTGGAAGCAAAGCTGGATAAGCCAAAGGTTGTACACTACCTTTGCTCCAAGAAGACGGAC
AGCTACTTCACACTCTGGCTGAATCTGGAACTGCTTCTGCCTGTTATCATTGACTGCTGGATTGACAATA
TCAGGCTGGTTTACAACAGAACATCTCGGGCCACCCAGTTTCCCGATGGTGTGGACGTGCGTGTCCCTGG
CTTTGGGGAAACATTTTCTATGGAATTCCTAGACCCCAGCAAGAGGAATGTGGGTTCCTATTTCTACACT
ATGGTGGAGAGCCTTGTGGGCTGGGGCTACACACGGGGTGAAGACGTTCGAGGTGCTCCCTATGATTGGC
GGCGAGCCCCAACGGCAGCCACAAGTCTGGAAGGACAAATATATCCATGCCTTCGTCTCACTGGGGGCGC
CCTGGGGGGGCGTGGCCAAGACGCTGCGTGTCCTGGCCTCAGGAGACAACAATCGCATTCCCGTCATTGG
GCCACTGAAGATCCGGGAACAGCAGCGATCTGCCGTCTCTACCAGCTGGCTACTGCCATACAACCACACT
TGGTCACATGA

Translation (236 aa):
MDRHLCTCRETQLRSGLLLPLFLLMMLADLTLPAQRHPPVVLVPGDLGNQLEAKLDKPKVVHYLCSKKTD
SYFTLWLNLELLLPVIIDCWIDNIRLVYNRTSRATQFPDGVDVRVPGFGETFSMEFLDPSKRNVGSYFYT
MVESLVGWGYTRGEDVRGAPYDWRRAPTAATSLEGQIYPCLRLTGGALGGRGQDAACPGLRRQQSHSRHW
ATEDPGTAAICRLYQLATAIQPHLVT


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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