NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS60062.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60062.1 Public Homo sapiens 1 ZCCHC17 24 110 108 CCDS HistoryNCBI Gene:51538Re-query CCDS DB by CCDS ID:60062.1Re-query CCDS DB by GeneID:51538See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60062.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000627541.1 ENSP00000486079.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000627541.1Link to Ensembl Protein Viewer:ENSP00000486079.1Re-query CCDS DB by Nucleotide ID:ENST00000627541Re-query CCDS DB by Protein ID:ENSP00000486079
Original member Current member NCBI NM_001282567.2 NP_001269496.1 Accepted alive Link to Nucleotide Sequence:NM_001282567.2Link to Protein Sequence:NP_001269496.1Re-query CCDS DB by Nucleotide ID:NM_001282567Re-query CCDS DB by Protein ID:NP_001269496Link to BLAST:NP_001269496.1

Chromosomal Locations for CCDS 60062.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 31319115 31319166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31337175 31337275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31338957 31339048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31346640 31346818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31348829 31348974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 31364032 31364193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGTGACAGACTATGGGGCCTTTATCAAAATCCCAGGCTGTCGGAAGCAAGGTCTGGTCCATCGAACTC
ATATGTCATCCTGTCGGGTGGATAAGCCCTCTGAGATAGTAGATGTTGGAGATAAAGTGTGGGTGAAGCT
TATTGGCCGAGAGATGAAAAATGATAGAATAAAAGTATCCCTCTCCATGAAGGTTGTCAATCAAGGGACT
GGGAAAGACCTTGATCCCAACAATGTTATCATTGAGCAAGAAGAGAGGCGGAGGCGATCCTTCCAGGATT
ACACTGGGCAGAAGATCACCCTTGAGGCTGTCTTGAACACTACCTGCAAGAAGTGTGGCTGTAAAGGTAG
GGTGAAGCCTCTGCCCTTTCCACGTTTCTCTCCTTGTGGATGGACCCTTTTCTGGAAGAAGGAGGCAGCC
CAGTGCCACTTTGCAAAAGATTGTTTCATGCAACCAGGTGGGACTAAATACTCTCTGATACCTGATGAGG
AAGAGGAAAAGGAAGAGGCAAAGTCAGCAGAGTTTGAGAAGCCTGACCCTACAAGGAATCCTTCTAGAAA
AAGAAAGAAGGAGAAGAAGAAAAAGAAACATAGAGATAGGAAGTCATCTGACTCTGACAGCTCAGACTCT
GAGAGTGATACAGGCAAGAGGGCAAGGCACACATCAAAAGACAGCAAGGCAGCAAAGAAGAAGAAAAAGA
AGAAGAAGCACAAGAAGAAGCACAAGGAGTGA

Translation (243 aa):
MVTDYGAFIKIPGCRKQGLVHRTHMSSCRVDKPSEIVDVGDKVWVKLIGREMKNDRIKVSLSMKVVNQGT
GKDLDPNNVIIEQEERRRRSFQDYTGQKITLEAVLNTTCKKCGCKGRVKPLPFPRFSPCGWTLFWKKEAA
QCHFAKDCFMQPGGTKYSLIPDEEEEKEEAKSAEFEKPDPTRNPSRKRKKEKKKKKHRDRKSSDSDSSDS
ESDTGKRARHTSKDSKAAKKKKKKKKHKKKHKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH