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Report for CCDS90910.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90910.1 Public Homo sapiens 1 NHSL3 24 110 108 CCDS HistoryNCBI Gene:57648Re-query CCDS DB by CCDS ID:90910.1Re-query CCDS DB by GeneID:57648See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90910.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373481.7 ENSP00000362580.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000373481.7Link to Ensembl Protein Viewer:ENSP00000362580.3Re-query CCDS DB by Nucleotide ID:ENST00000373481Re-query CCDS DB by Protein ID:ENSP00000362580
Original member Current member NCBI NM_001369553.1 NP_001356482.1 Accepted alive Link to Nucleotide Sequence:NM_001369553.1Link to Protein Sequence:NP_001356482.1Re-query CCDS DB by Nucleotide ID:NM_001369553Re-query CCDS DB by Protein ID:NP_001356482Link to BLAST:NP_001356482.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356482.1 1046 Q9P206-3 1046 100% 0 0

Chromosomal Locations for CCDS 90910.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 32754090 32754180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32767787 32767957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768062 32768117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32768652 32768775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769673 32769786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32769880 32772441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 32772865 32772887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3141 nt):
ATGGGGAACTCACACCACAAGAGGAAGGCCCCCAGCGGTCCCCGGGTCCGCAGCTTCTGGCGGTTCGGGC
GGTCGGCGAAGCGGCCGGCAGGCTCTGCCAAGGCTGAGAATGACAAACATCTAAGTGTAGGGCCTGGCCA
GGGGCCAGGGTCTGCAGTGGATGAGCACCAGGACAACGTCTTCTTTCCCAGTGGGCGACCCCCCCACCTG
GAAGAGCTGCACACTCAGGCCCAGGAGGGGCTCCGCTCCCTACAACACCAAGAGAAACAGAAACTGAACA
AGGGTGGCTGGGACCATGGAGACACCCAGAGTATCCAGTCCTCCCGGACGGGGCCGGATGAAGACAACAT
CTCCTTCTGCAGTCAGACCACATCCTACGTGGCTGAGAGCTCCACAGCAGAGGACGCGCTCTCCATCCGC
TCGGAGATGATCCAGCGCAAAGGCTCCACCTTCCGACCCCATGACTCATTTCCCAAATCTGGAAAGTCAG
GGCGGCGTCGGCGGGAGCGGCGGAGCACTGTGCTGGGACTCCCGCAGCATGTGCAGAAGGAGCTTGGCCT
GAGGAATGAGCGTGAGGCACCAGGCACGCCCCGGGCTCCTGGTGCACGGGATGCCGTACGCATCCCCACA
GTGGACGGCCGCCCCCGAGGCACCTCAGGGATGGGGGCCCGGGTGTCCCTGCAGGCGCTGGAGGCGGAGG
CGGAGGCTGGCGCTGAGACAGAGGCCATGCTGCAGCGCCACATTGACCGTGTCTACCGGGATGACACCTT
TGTTGGCCGGTCCACGGGTACCCGGGCCCCACCATTGACCCGGCCCATGTCCCTAGCAGTGCCTGGATTG
ACAGGAGGGGCAGGGCCTGCAGAGCCCCTGAGCCCGGCCATGTCCATCTCCCCCCAGGCCACCTACCTGT
CGAAGTTGATTCCACATGCTGTGCTGCCGCCTACAGTGGACGTGGTGGCCCTAGGCCGCTGCAGCCTGCG
CACACTAAGCCGCTGCAGCCTGCACTCGGCCAGCCCAGCCTCAGTCCGCTCGCTGGGGCGCTTCTCCTCC
GTCTCCAGCCCACAGCCCCGCAGCCGCCACCCATCCTCCTCCAGTGACACCTGGAGCCACTCTCAATCCT
CCGACACCATTGTGTCTGACGGTTCCACCCTCTCCTCTAAGGGTGGCTCTGAGGGCCAGCCGGAGAGCTC
TACGGCTAGCAATAGCGTGGTACCCCCTCCCCAGGGAGGCAGTGGGAGGGGCTCTCCCAGTGGGGGCAGC
ACTGCTGAGGCCTCAGACACACTCAGCATTCGGAGCAGTGGGCAGTTGTCTGGCCGGAGTGTGTCCCTGC
GTAAGCTGAAGCGGCCTCCACCCCCTCCCCGCCGGACCCACTCCCTCCATCAGCGGGGCTTAGCAGTGCC
TGATGGGCCATTAGGGTTGCCCCCTAAGCCTGAGCGTAAGCAGCAGCCCCAGCTGCCTCGGCCACCCACC
ACTGGTGGCTCAGAAGGGGCGGGGGCAGCACCCTGTCCACCCAACCCAGCCAACAGCTGGGTACCTGGCT
TGTCTCCGGGTGGTTCCCGGCGCCCCCCACGGTCCCCAGAACGGACACTTTCGCCCTCCAGTGGATACTC
GAGCCAAAGTGGTACTCCCACCCTCCCTCCCAAGGGCCTGGCAGGTCCCCCTGCTTCCCCAGGCAAGGCC
CAGCCCCCTAAACCAGAGCGTGTCACGTCTCTTCGCTCCCCTGGGGCCTCCGTCTCCTCTTCCCTCACGT
CTTTATGTTCCTCCTCCTCTGACCCAGCCCCCTCAGACCGCTCTGGGCCACAGATATTGACCCCCCTGGG
TGACAGGTTTGTCATACCTCCTCACCCCAAGGTGCCTGCCCCCTTCTCCCCACCTCCCTCCAAGCCCAGG
AGCCCTAACCCAGCTGCCCCTGCTCTAGCCGCCCCTGCTGTGGTTCCTGGGCCTGTTTCTACCACTGACG
CCAGTCCTCAGTCCCCTCCCACTCCCCAGACAACCTTGACTCCACTGCAGGAGTCTCCTGTCATCTCCAA
AGACCAGTCACCCCCACCTTCCCCACCCCCATCTTATCATCCACCCCCACCACCCACTAAGAAGCCAGAG
GTGGTTGTGGAGGCACCATCTGCCTCAGAGACTGCTGAGGAGCCCCTCCAAGATCCCAACTGGCCCCCTC
CCCCACCCCCTGCCCCTGAGGAGCAGGACCTGTCCATGGCTGACTTCCCCCCACCAGAGGAGGCTTTTTT
CTCTGTGGCCAGCCCTGAGCCTGCAGGCCCTTCAGGCTCCCCAGAGCTTGTCAGCTCCCCGGCTGCTTCG
TCCTCCTCAGCTACTGCTTTGCAGATTCAGCCCCCGGGTAGCCCAGACCCTCCTCCAGCTCCGCCAGCCC
CAGCTCCTGCTAGTTCCGCCCCAGGGCATGTGGCCAAGCTCCCTCAGAAGGAACCGGTGGGCTGTAGCAA
GGGTGGTGGGCCTCCCAGGGAGGACGTAGGTGCGCCCCTGGTCACGCCCTCGCTCCTGCAGATGGTGCGG
CTGCGCTCCGTGGGTGCTCCAGGAGGGGCTCCCACCCCAGCACTGGGGCCATCGGCCCCCCAGAAACCAC
TGCGAAGGGCCCTGTCAGGGCGGGCCAGCCCAGTGCCTGCCCCCTCCTCAGGGCTCCATGCTGCGGTCCG
ACTCAAGGCCTGCAGCCTGGCCGCCAGTGAAGGCCTCTCAAGTGCTCAGCCCAACGGACCGCCTGAGGCA
GAGCCACGGCCTCCCCAGTCCCCTGCCTCAACGGCCAGTTTCATCTTCTCCAAGGGCTCTAGGAAGCTGC
AGCTGGAGCGGCCCGTGTCCCCTGAGACCCAGGCTGACCTCCAGCGGAATCTGGTGGCAGAACTCCGGAG
CATCTCAGAGCAGCGGCCACCCCAGGCCCCAAAGAAGTCACCTAAGGCTCCCCCACCTGTGGCCCGCAAG
CCGTCTGTGGGAGTCCCCCCACCCGCCTCCCCCAGTTACCCTCGAGCTGAGCCCCTTACTGCTCCTCCCA
CCAATGGGCTCCCTCACACCCAGGACAGGACTAAGAGGGAGCTGGCGGAGAATGGAGGTGTCCTGCAGCT
GGTGGGCCCAGAGGAGAAGATGGGCCTCCCGGGCTCAGACTCACAGAAAGAGCTGGCCTGA

Translation (1046 aa):
MGNSHHKRKAPSGPRVRSFWRFGRSAKRPAGSAKAENDKHLSVGPGQGPGSAVDEHQDNVFFPSGRPPHL
EELHTQAQEGLRSLQHQEKQKLNKGGWDHGDTQSIQSSRTGPDEDNISFCSQTTSYVAESSTAEDALSIR
SEMIQRKGSTFRPHDSFPKSGKSGRRRRERRSTVLGLPQHVQKELGLRNEREAPGTPRAPGARDAVRIPT
VDGRPRGTSGMGARVSLQALEAEAEAGAETEAMLQRHIDRVYRDDTFVGRSTGTRAPPLTRPMSLAVPGL
TGGAGPAEPLSPAMSISPQATYLSKLIPHAVLPPTVDVVALGRCSLRTLSRCSLHSASPASVRSLGRFSS
VSSPQPRSRHPSSSSDTWSHSQSSDTIVSDGSTLSSKGGSEGQPESSTASNSVVPPPQGGSGRGSPSGGS
TAEASDTLSIRSSGQLSGRSVSLRKLKRPPPPPRRTHSLHQRGLAVPDGPLGLPPKPERKQQPQLPRPPT
TGGSEGAGAAPCPPNPANSWVPGLSPGGSRRPPRSPERTLSPSSGYSSQSGTPTLPPKGLAGPPASPGKA
QPPKPERVTSLRSPGASVSSSLTSLCSSSSDPAPSDRSGPQILTPLGDRFVIPPHPKVPAPFSPPPSKPR
SPNPAAPALAAPAVVPGPVSTTDASPQSPPTPQTTLTPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPE
VVVEAPSASETAEEPLQDPNWPPPPPPAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAAS
SSSATALQIQPPGSPDPPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVR
LRSVGAPGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVRLKACSLAASEGLSSAQPNGPPEA
EPRPPQSPASTASFIFSKGSRKLQLERPVSPETQADLQRNLVAELRSISEQRPPQAPKKSPKAPPPVARK
PSVGVPPPASPSYPRAEPLTAPPTNGLPHTQDRTKRELAENGGVLQLVGPEEKMGLPGSDSQKELA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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