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Report for CCDS90960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90960.1 Public Homo sapiens 1 IFT25 24 110 108 CCDS HistoryNCBI Gene:51668Re-query CCDS DB by CCDS ID:90960.1Re-query CCDS DB by GeneID:51668See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000371378.6 ENSP00000360429.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000371378.6Link to Ensembl Protein Viewer:ENSP00000360429.2Re-query CCDS DB by Nucleotide ID:ENST00000371378Re-query CCDS DB by Protein ID:ENSP00000360429
Original member Current member NCBI NM_001382261.1 NP_001369190.1 Accepted alive Link to Nucleotide Sequence:NM_001382261.1Link to Protein Sequence:NP_001369190.1Re-query CCDS DB by Nucleotide ID:NM_001382261Re-query CCDS DB by Protein ID:NP_001369190Link to BLAST:NP_001369190.1

Chromosomal Locations for CCDS 90960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 53916790 53917116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53923904 53923947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53928372 53928440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53930039 53930145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 53939985 53940082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (645 nt):
ATGAGAAAAATTGATCTCTGTCTGAGCTCTGAAGGGTCCGAAGTGATTTTAGCTACATCAAGTGATGAAA
AACACCCACCTGAAAATATCATTGATGGGAATCCAGAAACGTTTTGGACCACCACAGGAATGTTTCCCCA
GGAATTCATTATTTGTTTCCACAAACATGTAAGGATTGAAAGGCTTGTAATCCAAAGTTACTTTGTACAG
ACCTTGAAGATTGAAAAAAGCACGTCTAAAGAGCCAGTTGATTTTGAGCAATGGATTGAAAAAGATTTGG
TACACACAGAGGGGCAGCTTCAAAATGAAGAAATTGTGGCCGGAGTGGGATGGCGCTATCTTGGCTCACT
GCAACCTCCGTCTCCCGGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCTAGGAGCTGGGATTACAGGCAC
CTGCCACCACACCCAGCTAATTTTTTTGCATTTTTAGTAAAGATGGGGTTTTGCCATGTTGGCCAGGCTG
GTCTCGAACTCCAGACCTCAGGTGATCTGCCCACCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAG
CCACTGCGCCCGGCCCGGAAAAGCAAATTTTAAATGGAGAAGAGTAGGAAAGGCATTTCAAAAGCCACCT
TGGTATACCAGATAA

Translation (214 aa):
MRKIDLCLSSEGSEVILATSSDEKHPPENIIDGNPETFWTTTGMFPQEFIICFHKHVRIERLVIQSYFVQ
TLKIEKSTSKEPVDFEQWIEKDLVHTEGQLQNEEIVAGVGWRYLGSLQPPSPGFKRFSCLSLPRSWDYRH
LPPHPANFFAFLVKMGFCHVGQAGLELQTSGDLPTSASQSAGITGVSHCARPGKANFKWRRVGKAFQKPP
WYTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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