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Report for CCDS827.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
827.1 Public Homo sapiens 1 KCNA2 24 110 108 CCDS HistoryNCBI Gene:3737Re-query CCDS DB by CCDS ID:827.1Re-query CCDS DB by GeneID:3737See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 827.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000316361.10 ENSP00000314520.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000316361.10Link to Ensembl Protein Viewer:ENSP00000314520.4Re-query CCDS DB by Nucleotide ID:ENST00000316361Re-query CCDS DB by Protein ID:ENSP00000314520
Original member Current member EBI ENST00000485317.6 ENSP00000433109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000485317.6Link to Ensembl Protein Viewer:ENSP00000433109.1Re-query CCDS DB by Nucleotide ID:ENST00000485317Re-query CCDS DB by Protein ID:ENSP00000433109
Original member Current member EBI ENST00000633222.1 ENSP00000487785.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000633222.1Link to Ensembl Protein Viewer:ENSP00000487785.1Re-query CCDS DB by Nucleotide ID:ENST00000633222Re-query CCDS DB by Protein ID:ENSP00000487785
Original member Current member EBI ENST00000638532.1 ENSP00000491613.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638532.1Link to Ensembl Protein Viewer:ENSP00000491613.1Re-query CCDS DB by Nucleotide ID:ENST00000638532Re-query CCDS DB by Protein ID:ENSP00000491613
Original member Current member EBI ENST00000638616.2 ENSP00000491977.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000638616.2Link to Ensembl Protein Viewer:ENSP00000491977.1Re-query CCDS DB by Nucleotide ID:ENST00000638616Re-query CCDS DB by Protein ID:ENSP00000491977
Original member Current member EBI ENST00000675391.1 ENSP00000502642.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000675391.1Link to Ensembl Protein Viewer:ENSP00000502642.1Re-query CCDS DB by Nucleotide ID:ENST00000675391Re-query CCDS DB by Protein ID:ENSP00000502642
Original member Current member NCBI NM_004974.4 NP_004965.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004974.4Link to Protein Sequence:NP_004965.1Re-query CCDS DB by Nucleotide ID:NM_004974Re-query CCDS DB by Protein ID:NP_004965Link to BLAST:NP_004965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004965.1 499 P16389-1 499 100% 0 0

Chromosomal Locations for CCDS 827.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 110603283 110604782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGACAGTGGCCACCGGAGACCCAGCAGACGAGGCTGCTGCCCTCCCTGGGCACCCACAGGACACCTATG
ACCCAGAGGCAGACCACGAGTGCTGTGAGAGGGTGGTGATCAACATCTCAGGGCTGCGGTTTGAGACCCA
GCTAAAGACCTTAGCCCAGTTTCCAGAGACCCTCTTAGGGGACCCAAAGAAACGAATGAGGTACTTTGAC
CCCCTCCGAAATGAGTACTTTTTCGATCGGAACCGCCCTAGCTTTGATGCCATTTTGTACTACTACCAGT
CAGGGGGCCGATTGAGGCGACCTGTGAATGTGCCCTTAGATATATTCTCTGAAGAAATTCGGTTTTATGA
GCTGGGAGAAGAAGCGATGGAGATGTTTCGGGAAGATGAAGGCTACATCAAGGAGGAAGAGCGTCCTCTG
CCTGAAAATGAGTTTCAGAGACAAGTGTGGCTTCTCTTTGAATACCCAGAGAGCTCAGGGCCTGCCAGGA
TTATAGCTATTGTGTCTGTCATGGTGATTCTGATCTCAATTGTCAGCTTCTGTCTGGAAACATTGCCCAT
CTTCCGGGATGAGAATGAAGACATGCATGGTAGTGGGGTGACCTTCCACACCTATTCCAACAGCACCATC
GGGTACCAGCAGTCCACTTCCTTCACAGACCCTTTCTTCATTGTAGAGACACTCTGCATCATCTGGTTCT
CCTTTGAATTCTTGGTGAGGTTCTTTGCCTGTCCCAGCAAAGCCGGCTTCTTCACCAACATCATGAACAT
CATTGACATTGTGGCCATCATCCCCTACTTCATCACCCTGGGGACAGAGTTGGCTGAGAAGCCAGAGGAC
GCTCAGCAAGGCCAGCAGGCCATGTCACTGGCCATCCTCCGTGTCATCCGGTTGGTAAGAGTCTTTAGGA
TTTTCAAGTTGTCCAGACACTCCAAAGGTCTCCAGATTCTAGGTCAGACCCTCAAAGCCAGCATGAGAGA
ATTGGGCCTCCTGATATTCTTTCTCTTCATAGGGGTCATCCTTTTCTCTAGTGCTGTGTATTTTGCAGAG
GCCGATGAGCGAGAGTCCCAGTTCCCCAGCATCCCAGATGCCTTCTGGTGGGCAGTCGTCTCCATGACAA
CTGTAGGCTATGGAGACATGGTTCCGACTACCATTGGGGGAAAGATAGTGGGTTCCCTATGTGCGATTGC
AGGTGTGTTAACTATTGCCTTACCGGTCCCTGTCATTGTGTCCAATTTCAACTACTTCTACCACCGGGAG
ACAGAGGGAGAGGAACAGGCCCAATACTTGCAAGTGACAAGCTGTCCAAAGATCCCATCCTCCCCTGACC
TAAAGAAAAGTAGAAGTGCCTCTACCATTAGTAAGTCTGATTACATGGAGATCCAGGAGGGTGTAAATAA
CAGTAATGAGGACTTTAGAGAGGAAAACTTGAAAACAGCCAACTGTACCTTGGCTAACACAAACTATGTG
AATATTACCAAAATGTTAACTGATGTCTGA

Translation (499 aa):
MTVATGDPADEAAALPGHPQDTYDPEADHECCERVVINISGLRFETQLKTLAQFPETLLGDPKKRMRYFD
PLRNEYFFDRNRPSFDAILYYYQSGGRLRRPVNVPLDIFSEEIRFYELGEEAMEMFREDEGYIKEEERPL
PENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGSGVTFHTYSNSTI
GYQQSTSFTDPFFIVETLCIIWFSFEFLVRFFACPSKAGFFTNIMNIIDIVAIIPYFITLGTELAEKPED
AQQGQQAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAE
ADERESQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFYHRE
TEGEEQAQYLQVTSCPKIPSSPDLKKSRSASTISKSDYMEIQEGVNNSNEDFREENLKTANCTLANTNYV
NITKMLTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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