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Report for CCDS30808.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
30808.1 Public Homo sapiens 1 LRIG2 24 110 108 CCDS HistoryNCBI Gene:9860Re-query CCDS DB by CCDS ID:30808.1Re-query CCDS DB by GeneID:9860See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 30808.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361127.6 ENSP00000355396.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361127.6Link to Ensembl Protein Viewer:ENSP00000355396.4Re-query CCDS DB by Nucleotide ID:ENST00000361127Re-query CCDS DB by Protein ID:ENSP00000355396
Original member Current member NCBI NM_014813.3 NP_055628.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014813.3Link to Protein Sequence:NP_055628.1Re-query CCDS DB by Nucleotide ID:NM_014813Re-query CCDS DB by Protein ID:NP_055628Link to BLAST:NP_055628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055628.1 1065 O94898 1065 100% 0 0

Chromosomal Locations for CCDS 30808.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 113073407 113073645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113091318 113091383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113093206 113093280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113093430 113093564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113094339 113094482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113094612 113094755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113095874 113096017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113096222 113096365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113098705 113098785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113100211 113100282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113100420 113100488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113107594 113107757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113110242 113110562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113112479 113112760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113114427 113114876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113116287 113116436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113119233 113119523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 113123875 113124101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3198 nt):
ATGGCGCCGGCGCCCCTAGGCGTCCCGGAGGAGCAGTTGCTGGGGTGTCGATCTAGAGTGCTTTCTCGGT
TACTCTTCATTGCCCAGACCGCTCTCCTCCTGTTGCCCGCCGCCGGAGCAGGTCTCTGCCCCGCGCCCTG
CTCCTGCCGCATTCCTCTCCTGGACTGCAGTCGCAGGAAATTGCCCGCACCGAGCTGGAGGGCGCTGTCG
GGCTTGCTGCCCCCCGACACCGCTATCCTGGATTTCAGTCATAATCGGTTGTCTAACTGGAACATCAGCT
TGGAATCACAAACATTACAGGAAGTGAAAATGAATTACAATGAACTAACAGAAATCCCGTATTTTGGAGA
ACCTACATCTAATATTACTCTACTTTCATTAGTCCATAATATAATCCCAGAAATAAATGCACAGGCACTC
CAGTTTTACCCTGCTCTGGAGAGTTTAGACCTCAGCTCAAATATAATATCAGAAATCAAGACATCTTCAT
TTCCTCGCATGCAGCTTAAATACCTGAATTTAAGTAATAACAGAATAACCACCTTGGAGGCTGGTTGCTT
CGATAATTTATCAAGTTCCTTATTAGTGGTAAAGTTAAACCGTAACCGAATGAGCATGATTCCACCTAAG
ATCTTCAAGCTGCCTCACCTCCAATTCTTGGAACTTAAAAGAAACAGAATTAAAATTGTGGAAGGTCTTA
CATTCCAAGGGCTTGACTCCTTAAGATCTTTGAAAATGCAGCGGAATGGAATTAGCAAACTTAAGGATGG
AGCATTTTTTGGCTTGAATAACATGGAAGAACTAGAACTGGAACACAACAACCTTACACGAGTAAACAAG
GGGTGGTTGTATGGCTTGCGAATGTTACAGCAGCTCTATGTGAGCCAGAATGCTATTGAAAGAATCAGCC
CTGATGCATGGGAGTTCTGCCAAAGACTATCCGAACTTGATTTGTCCTATAACCAGCTGACCCGCCTGGA
TGAATCTGCCTTTGTGGGTCTGAGCTTATTGGAGAGATTGAATTTAGGAGACAACAGAGTCACTCATATT
GCTGATGGTGTATTTAGATTTCTTTCCAATCTTCAGACATTAGACTTAAGAAACAATGAAATTTCATGGG
CCATAGAAGATGCTAGTGAAGCCTTTGCTGGACTCACAAGTCTCACTAAACTAATCTTACAAGGAAACCA
GATTAAGTCAATTACAAAGAAAGCATTCATTGGTCTTGAATCCCTTGAGCATCTAGATTTGAACAATAAT
GCTATAATGTCTATCCAAGAAAATGCTTTTTCTCAGACTCATTTAAAAGAACTGATTCTGAACACAAGCA
GTTTGCTCTGTGACTGCCATTTGAAGTGGCTACTTCAATGGTTGGTTGATAATAACTTTCAACATTCTGT
GAATGTAAGCTGTGCACACCCTGAATGGCTAGCAGGGCAAAGCATCCTGAATGTGGATCTGAAAGATTTT
GTCTGTGATGATTTTCTCAAGCCACAGATAAGGACACATCCTGAAACCATAATTGCTCTAAGAGGCATGA
ATGTGACTCTGACGTGCACTGCAGTGAGCAGCAGTGATTCACCCATGTCCACTGTGTGGCGCAAAGACAG
TGAAATCCTGTATGACGTGGATACTGAGAATTTTGTTCGTTATTGGCAGCAAGCTGGAGAAGCTCTGGAA
TATACTAGTATCTTACATCTTTTCAATGTGAATTTCACAGATGAAGGAAAATATCAGTGTATTGTTACTA
ATCACTTTGGTTCTAATTATTCTCAGAAAGCCAAACTGACTGTAAATGAGATGCCATCTTTTCTGAAAAC
GCCAATGGATCTGACTATTCGCACTGGTGCCATGGCCAGATTAGAATGTGCTGCAGAGGGACACCCTGCA
CCTCAGATTTCCTGGCAGAAAGATGGTGGTACTGACTTTCCTGCGGCTCGAGAAAGACGCATGCACGTCA
TGCCCGAGGATGACGTCTTCTTTATTGCCAATGTGAAAATAGAAGATATGGGAATCTATAGCTGCATGGC
ACAAAATACAGCAGGAGGTCTCTCAGCAAATGCTTCCCTAACAGTGTTAGAGACACCCTCATTTATTAGA
CCCCTGGAGGATAAGACAGTAACACGAGGTGAAACTGCGGTGTTACAGTGCATAGCTGGAGGGAGTCCTG
CCCCTCGTCTCAACTGGACTAAAGATGATGGGCCTTTGCTGGTGACAGAACGACATTTCTTTGCTGCAGC
CAATCAGCTTCTCATCATTGTAGATGCCGGGCTAGAAGATGCTGGGAAATATACCTGCATTATGTCTAAC
ACCCTTGGGACAGAACGTGGCCACATTTACCTAAATGTCATTTCATCCCCCAATTGTGACTCTTCCCAGA
GTAGCATTGGGCATGAAGATGATGGCTGGACCACAGTTGGCATTGTCATCATTGTTGTGGTCTGCTGTGT
TGTTGGCACTTCTTTGATCTGGGTCATTGTTATTTACCACATGAGAAGGAAAAATGAAGACTATAGTATC
ACAAACACAGAGGAGCTCAATCTGCCTGCAGACATTCCCAGCTACTTGTCTTCCCAAGGAACGCTGTCTG
AGCCACAGGAAGGCTACAGCAACTCTGAGGCAGGCAGTCATCAGCAACTTATGCCTCCTGCCAATGGATA
TATACACAAAGGCACTGACGGTGGCACTGGTACCCGGGTGATTTGCTCAGATTGTTATGACAATGCCAAC
ATCTACTCCAGGACCCGAGAATACTGTCCATACACCTATATTGCTGAGGAGGACGTTCTTGATCAGACAC
TGTCCAGCCTCATGGTCCAAATGCCTAAAGAGACATATTTAGTACATCCTCCCCAGGATACTACTGCCCT
AGAGAGCCTGATACCGTCAGCCAACAGAGAGCCATCTGCCTTTCCCACCAACCATGAGAGGATAAGTGAG
AAGAAACTTCCCTCCACACAGATGAGCGGTGAAACATTGCAGCGGCCCGTGTGGAACATAAACAGAGAAC
TAGGCCTGCCTCATCCTCCTTTTTCCCAGCAGCCAGTCCATGAGTCACCACAACTTCATCAAAATGAGGG
CCTGGCAGGGAGAGAGCCAGACTGTTCTGCTTCTTCCATGTCCTGCCACAGGTTACAGGATCATGCTTTT
GATTTTAGTAGGACTCGGAACATTCAAGATGGTAGTGAGGGCACATGA

Translation (1065 aa):
MAPAPLGVPEEQLLGCRSRVLSRLLFIAQTALLLLPAAGAGLCPAPCSCRIPLLDCSRRKLPAPSWRALS
GLLPPDTAILDFSHNRLSNWNISLESQTLQEVKMNYNELTEIPYFGEPTSNITLLSLVHNIIPEINAQAL
QFYPALESLDLSSNIISEIKTSSFPRMQLKYLNLSNNRITTLEAGCFDNLSSSLLVVKLNRNRMSMIPPK
IFKLPHLQFLELKRNRIKIVEGLTFQGLDSLRSLKMQRNGISKLKDGAFFGLNNMEELELEHNNLTRVNK
GWLYGLRMLQQLYVSQNAIERISPDAWEFCQRLSELDLSYNQLTRLDESAFVGLSLLERLNLGDNRVTHI
ADGVFRFLSNLQTLDLRNNEISWAIEDASEAFAGLTSLTKLILQGNQIKSITKKAFIGLESLEHLDLNNN
AIMSIQENAFSQTHLKELILNTSSLLCDCHLKWLLQWLVDNNFQHSVNVSCAHPEWLAGQSILNVDLKDF
VCDDFLKPQIRTHPETIIALRGMNVTLTCTAVSSSDSPMSTVWRKDSEILYDVDTENFVRYWQQAGEALE
YTSILHLFNVNFTDEGKYQCIVTNHFGSNYSQKAKLTVNEMPSFLKTPMDLTIRTGAMARLECAAEGHPA
PQISWQKDGGTDFPAARERRMHVMPEDDVFFIANVKIEDMGIYSCMAQNTAGGLSANASLTVLETPSFIR
PLEDKTVTRGETAVLQCIAGGSPAPRLNWTKDDGPLLVTERHFFAAANQLLIIVDAGLEDAGKYTCIMSN
TLGTERGHIYLNVISSPNCDSSQSSIGHEDDGWTTVGIVIIVVVCCVVGTSLIWVIVIYHMRRKNEDYSI
TNTEELNLPADIPSYLSSQGTLSEPQEGYSNSEAGSHQQLMPPANGYIHKGTDGGTGTRVICSDCYDNAN
IYSRTREYCPYTYIAEEDVLDQTLSSLMVQMPKETYLVHPPQDTTALESLIPSANREPSAFPTNHERISE
KKLPSTQMSGETLQRPVWNINRELGLPHPPFSQQPVHESPQLHQNEGLAGREPDCSASSMSCHRLQDHAF
DFSRTRNIQDGSEGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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