NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS86030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86030.1 Public Homo sapiens 1 FIRRM 24 110 108 CCDS HistoryNCBI Gene:55732Re-query CCDS DB by CCDS ID:86030.1Re-query CCDS DB by GeneID:55732See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 86030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000413811.3 ENSP00000389257.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000413811.3Link to Ensembl Protein Viewer:ENSP00000389257.3Re-query CCDS DB by Nucleotide ID:ENST00000413811Re-query CCDS DB by Protein ID:ENSP00000389257
Original member Current member NCBI NM_001363739.2 NP_001350668.1 Accepted alive Link to Nucleotide Sequence:NM_001363739.2Link to Protein Sequence:NP_001350668.1Re-query CCDS DB by Nucleotide ID:NM_001363739Re-query CCDS DB by Protein ID:NP_001350668Link to BLAST:NP_001350668.1
Original member Current member NCBI NM_001366771.1 NP_001353700.1 Accepted alive Link to Nucleotide Sequence:NM_001366771.1Link to Protein Sequence:NP_001353700.1Re-query CCDS DB by Nucleotide ID:NM_001366771Re-query CCDS DB by Protein ID:NP_001353700Link to BLAST:NP_001353700.1
Original member Current member NCBI NM_001366772.1 NP_001353701.1 Accepted alive Link to Nucleotide Sequence:NM_001366772.1Link to Protein Sequence:NP_001353701.1Re-query CCDS DB by Nucleotide ID:NM_001366772Re-query CCDS DB by Protein ID:NP_001353701Link to BLAST:NP_001353701.1
Original member Current member NCBI NM_001366773.1 NP_001353702.1 Accepted alive Link to Nucleotide Sequence:NM_001366773.1Link to Protein Sequence:NP_001353702.1Re-query CCDS DB by Nucleotide ID:NM_001366773Re-query CCDS DB by Protein ID:NP_001353702Link to BLAST:NP_001353702.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001350668.1 530 Q9NSG2-3 530 100% 0 0
NP_001353700.1 530 Q9NSG2-3 530 100% 0 0
NP_001353701.1 530 Q9NSG2-3 530 100% 0 0
NP_001353702.1 530 Q9NSG2-3 530 100% 0 0

Chromosomal Locations for CCDS 86030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 169827172 169827199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169827711 169827840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169829263 169829449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169830259 169830341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169830696 169830747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169832417 169832506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169836927 169837112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169842417 169842539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169843674 169843769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169847690 169847803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169849500 169849604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169850265 169850345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169851817 169851936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 169852790 169852987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGCAGGTGGTTTTGGACAGTAAATTAGACCTGCCATGTGAACTGCAGTTTCCACAATGTCTTCTTCTGG
TTGTTGTCATGGATAAGCTGCCATCTCAGCCTAAGGAAGTGCAAACCCTGTGGTGCACAGACAGCCAGGT
CTCAGAAACGACAACCAGGATATCTCTACTCAAAGCCGTTTTCTACAGTTTTGAGCAGTGTTCTGGTGAA
CTCTCTCTACCTGTTCATTTACAGGGATTAAAGAGTAAGGGGAAAGCTGAGGTGGCTGTCACCTTGTATC
AGCATGTTTGTGTTCATCTGTGTACATTTATTACTTCCTTTCATCCCTCACTGTTTGCTGAACTGGATGC
TGCTCTGCTGAATGCTGTACTTAGTGCTAATATGATCACCTCTTTGTTAGCTATGGATGCATGGTGCTTC
CTTGCTCGATATGGGACTGCTGAACTGTGTGCACACCATGTCACCATAGTGGCTCATCTGATAAAGTCAT
GCCCTGGAGAATGTTATCAACTCATCAACCTATCAATACTGTTGAAGCGTCTCTTTTTCTTCATGGCACC
ACCCCATCAGCTGGAGTTTATCCAGAAATTTTCCCCAAAAGAAGCAGAAAATCTGCCTCTGTGGCAACAT
ATTTCCTTCCAGGCGTTACCTCCTGAGCTTAGGGAACAAACTGTCCATGAGGTCACCACAGTAGGCACTG
CAGAATGCAGGAAATGGCTGAGCAGGAGTCGTACTTTGGGAGAACTAGAATCTCTGAACACAGTACTGTC
TGCTTTGCTTGCAGTATGTAATTCTGCTGGTGAAGCTTTGGATACAGGAAAACAAACTGCAATTATCGAA
GTTGTGAGTCAGCTTTGGGCTTTTTTAAACATTAAACAGGTAGCAGATCAACCTTATGTTCAACAGACAT
TCAGCCTTTTACTTCCACTGTTGGGATTTTTCATTCAAACTCTAGATCCTAAACTGATACTTCAGGCAGT
AACTTTGCAGACCTCGCTACTTAAATTAGAGCTTCCTGACTATGTTCGTTTGGCAATGTTGGATTTTGTA
TCTTCTTTAGGAAAACTTTTTATACCTGAAGCTATCCAGGACAGAATTCTGCCCAACCTGTCCTGTATGT
TTGCCTTACTGCTAGCTGACAGGAGTTGGCTGCTAGAACAACATACCTTGGAGGCGTTTACTCAGTTCGC
TGAGGGAACAAATCATGAAGAGATAGTTCCACAGTGTCTCAGTTCTGAAGAAACTAAGAACAAAGTTGTA
TCCTTTCTGGAGAAGACTGGGTTTGTAGATGAAACTGAAGCTGCCAAAGTGGAACGTGTGAAACAGGAAA
AAGGTATTTTCTGGGAACCCTTTGCTAATGTGACTGTAGAAGAAGCAAAGAGGTCATCTTTACAGCCTTA
TGCAAAAAGAGCTCGTCAGGAGTTCCCCTGGGAAGAAGAGTACAGGTCAGCGCTGCATACAATAGCAGGG
GCTTTGGAAGCAACTGAGTCACTACTCCAAAAGGGTCCTGCTCCAGCCTGGCTTTCAATGGAAATGGAGG
CGCTCCAAGAAAGGATGGATAAGCTAAAACGTTACATACATACTCTAGGGTGA

Translation (530 aa):
MQVVLDSKLDLPCELQFPQCLLLVVVMDKLPSQPKEVQTLWCTDSQVSETTTRISLLKAVFYSFEQCSGE
LSLPVHLQGLKSKGKAEVAVTLYQHVCVHLCTFITSFHPSLFAELDAALLNAVLSANMITSLLAMDAWCF
LARYGTAELCAHHVTIVAHLIKSCPGECYQLINLSILLKRLFFFMAPPHQLEFIQKFSPKEAENLPLWQH
ISFQALPPELREQTVHEVTTVGTAECRKWLSRSRTLGELESLNTVLSALLAVCNSAGEALDTGKQTAIIE
VVSQLWAFLNIKQVADQPYVQQTFSLLLPLLGFFIQTLDPKLILQAVTLQTSLLKLELPDYVRLAMLDFV
SSLGKLFIPEAIQDRILPNLSCMFALLLADRSWLLEQHTLEAFTQFAEGTNHEEIVPQCLSSEETKNKVV
SFLEKTGFVDETEAAKVERVKQEKGIFWEPFANVTVEEAKRSSLQPYAKRARQEFPWEEEYRSALHTIAG
ALEATESLLQKGPAPAWLSMEMEALQERMDKLKRYIHTLG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH