NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS55662.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55662.1 Public Homo sapiens 1 RABGAP1L 24 110 108 CCDS HistoryNCBI Gene:9910Re-query CCDS DB by CCDS ID:55662.1Re-query CCDS DB by GeneID:9910See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 9, NCBI annotation release 37.3, Ensembl annotation release 64

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55662.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367688.3 ENSP00000356661.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367688.3Link to Ensembl Protein Viewer:ENSP00000356661.3Re-query CCDS DB by Nucleotide ID:ENST00000367688Re-query CCDS DB by Protein ID:ENSP00000356661
Original member Current member NCBI NM_001243764.2 NP_001230693.1 Accepted alive Link to Nucleotide Sequence:NM_001243764.2Link to Protein Sequence:NP_001230693.1Re-query CCDS DB by Nucleotide ID:NM_001243764Re-query CCDS DB by Protein ID:NP_001230693Link to BLAST:NP_001230693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230693.1 253 B7ZAP0-1 253 100% 0 0

Chromosomal Locations for CCDS 55662.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174964947 174964985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174969277 174969387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174976078 174976182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174978807 174978890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174982834 174982905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174988641 174988838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 174989849 174990001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (762 nt):
ATGATTGAAAACAGTAGTTGGTCTATGACTTTTGAGGAGAGGGAGAACCGAAGATTACAGGAGGCCAGCA
TGAGGTTGGAACAAGAGAATGATGACCTTGCCCATGAACTAGTAACAAGCAAAATTGCTCTACGGAATGA
CTTGGATCAGGCAGAAGACAAGGCAGATGTGTTGAATAAAGAGCTCCTTTTGACCAAACAGAGGCTGGTG
GAGACTGAAGAGGAGAAGAGGAAGCAAGAGGAAGAGACTGCCCAGCTAAAAGAAGTCTTCAGGAAACAGC
TAGAGAAGGCAGAATATGAAATAAAGAAGACTACAGCTATCATTGCTGAGTATAAACAGATCTGTTCGCA
GTTGAGTACCAGGCTGGAGAAACAGCAAGCAGCCAGCAAGGAGGAGCTGGAAGTGGTAAAGGGTAAGATG
ATGGCATGCAAACACTGCAGTGACATTTTCAGCAAGGAGGGTGCTTTGAAACTAGCAGCCACAGGCAGAG
AGGACCAGGGAATTGAAACAGATGATGAGAAGGACTCACTTAAGAAGCAGCTGAGAGAGATGGAACTGGA
ACTGGCACAAACCAAACTGCAGTTGGTGGAGGCCAAGTGTAAAATTCAGGAACTTGAACATCAGAGAGGA
GCCCTTATGAATGAAATCCAAGCTGCGAAAAACTCTTGGTTTAGCAAAACCCTGAACTCTATCAAAACGG
CCACGGGCACCCAGCCATTGCAGCCAGCACCGGTCACCCAGCCACCCAAGGAGAGCACATAG

Translation (253 aa):
MIENSSWSMTFEERENRRLQEASMRLEQENDDLAHELVTSKIALRNDLDQAEDKADVLNKELLLTKQRLV
ETEEEKRKQEEETAQLKEVFRKQLEKAEYEIKKTTAIIAEYKQICSQLSTRLEKQQAASKEELEVVKGKM
MACKHCSDIFSKEGALKLAATGREDQGIETDDEKDSLKKQLREMELELAQTKLQLVEAKCKIQELEHQRG
ALMNEIQAAKNSWFSKTLNSIKTATGTQPLQPAPVTQPPKEST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH