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Report for CCDS53434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53434.1 Public Homo sapiens 1 TEX35 24 110 108 CCDS HistoryNCBI Gene:84066Re-query CCDS DB by CCDS ID:53434.1Re-query CCDS DB by GeneID:84066See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53434.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367639.1 ENSP00000356611.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000367639.1Link to Ensembl Protein Viewer:ENSP00000356611.1Re-query CCDS DB by Nucleotide ID:ENST00000367639Re-query CCDS DB by Protein ID:ENSP00000356611
Original member Current member NCBI NM_001170722.2 NP_001164193.1 Accepted alive Link to Nucleotide Sequence:NM_001170722.2Link to Protein Sequence:NP_001164193.1Re-query CCDS DB by Nucleotide ID:NM_001170722Re-query CCDS DB by Protein ID:NP_001164193Link to BLAST:NP_001164193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164193.1 215 Q5T0J7-2 215 100% 0 0

Chromosomal Locations for CCDS 53434.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 178513189 178513251 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178514027 178514077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178514700 178514768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178515859 178515915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178516615 178516674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178520372 178520436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178520673 178520874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178521222 178521264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 178523302 178523339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGTCGGCCAAGAGGGCAGAATTGAAGAAAACACATCTGGTAAAAGAGAGACATTGCTGGACAAGCAAGA
ACTACAAGGCAGTTTGCCTGGAATTGAAGCCAGAGCCGACCAAAACATTTGATTACAAAGCAGTTAAACA
AGAAGGGCGGTTTACCAAAGCAGGAGTGACACAGGACCTAAAGAATGAACTCAGGGAAGTGAGAGAAGAG
CTCAAGGAGAAAATGGAGGAGATAAAACAGATAAAGGATCTAATGGACAAGGATTTTGATAAACTTCACG
AATTTGTGGAAATTATGAAGGAAATGCAGAAAGATATGGATGAGAAGATGGACATTTTAATAAATACACA
GAAGAACTATAAGCTTCCCCTTAGAAGAGCACCAAAGGAGCAGCAGGAACTCAGGCTGATGGGAAAGACT
CACAGAGAACCACAGCTCAGGCCCAAGAAAATGGATGGAGCCAGTGGAGTCAATGGAGCACCCTGTGCTC
TTCACAAGAAGACGATGGCACCACAAAAAACAAAACAGGGCTCACTGGATCCCCTTCATCACTGTGGGAC
CTGCTGCGAGAAATGTTTGTTGTGTGCTCTAAAGAACAACTACAATCGGGGTATATACGCTGCAGTGGGA
CTGCTGGATCTATGGTAG

Translation (215 aa):
MSAKRAELKKTHLVKERHCWTSKNYKAVCLELKPEPTKTFDYKAVKQEGRFTKAGVTQDLKNELREVREE
LKEKMEEIKQIKDLMDKDFDKLHEFVEIMKEMQKDMDEKMDILINTQKNYKLPLRRAPKEQQELRLMGKT
HREPQLRPKKMDGASGVNGAPCALHKKTMAPQKTKQGSLDPLHHCGTCCEKCLLCALKNNYNRGIYAAVG
LLDLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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