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Report for CCDS41587.3 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41587.3 Public Homo sapiens 11 TMEM80 24 110 108 CCDS HistoryNCBI Gene:283232Re-query CCDS DB by CCDS ID:41587.3Re-query CCDS DB by GeneID:283232See the combined annotation on chromosome 11 in Sequence Viewer

Public Note for CCDS 41587.1
The coding region has been updated to shorten the N-terminus to one that is supported by conservation data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 41587.3

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397510.9 ENSP00000380646.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397510.9Link to Ensembl Protein Viewer:ENSP00000380646.4Re-query CCDS DB by Nucleotide ID:ENST00000397510Re-query CCDS DB by Protein ID:ENSP00000380646
Original member Current member NCBI NM_001042463.3 NP_001035928.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042463.3Link to Protein Sequence:NP_001035928.3Re-query CCDS DB by Nucleotide ID:NM_001042463Re-query CCDS DB by Protein ID:NP_001035928Link to BLAST:NP_001035928.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035928.3 143 Q96HE8-1 143 100% 0 0

Chromosomal Locations for CCDS 41587.3

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 695828 695846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 698869 698888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 700142 700235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 700615 700707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 702945 703150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGGCGGCCCCGCGGCGAGGGAGAGGATCCTCCACAGTGCTCTCTTCAGTTCCCCTTCAAATGCTGTTTT
ATCTCAGCGGAACGTACTACGCCCTGTATTTCCTCGCCACGCTCCTGATGATCACGTATAAAAGTCAGGT
GTTCAGCTATCCTCACCGCTACCTGGTCCTCGATCTTGCTCTGCTGTTTCTGATGGGGATTCTAGAAGCA
GTTCGGTTATACCTGGGCACCAGGGGCAACCTGACAGAGGCTGAGAGGCCGCTGGCCGCCAGCCTGGCCC
TCACGGCTGGCACCGCCCTCCTCTCTGCCCACTTCCTGCTTTGGCAGGCCCTAGTGTTGTGGGCGGACTG
GGCCCTCAGCGCCACGCTCCTGGCCCTTCACGGCCTGGAGGCCGTCCTGCAGGTGGTTGCCATCGCGGCC
TTCACCAGGTAG

Translation (143 aa):
MAAPRRGRGSSTVLSSVPLQMLFYLSGTYYALYFLATLLMITYKSQVFSYPHRYLVLDLALLFLMGILEA
VRLYLGTRGNLTEAERPLAASLALTAGTALLSAHFLLWQALVLWADWALSATLLALHGLEAVLQVVAIAA
FTR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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