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Report for CCDS53641.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53641.1 Public Homo sapiens 11 SAXO4 24 110 108 CCDS HistoryNCBI Gene:220004Re-query CCDS DB by CCDS ID:53641.1Re-query CCDS DB by GeneID:220004See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53641.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000432063.6 ENSP00000391560.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000432063.6Link to Ensembl Protein Viewer:ENSP00000391560.2Re-query CCDS DB by Nucleotide ID:ENST00000432063Re-query CCDS DB by Protein ID:ENSP00000391560
Original member Current member NCBI NM_001170753.2 NP_001164224.1 Accepted alive Link to Nucleotide Sequence:NM_001170753.2Link to Protein Sequence:NP_001164224.1Re-query CCDS DB by Nucleotide ID:NM_001170753Re-query CCDS DB by Protein ID:NP_001164224Link to BLAST:NP_001164224.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164224.1 405 Q7Z5V6-2 405 100% 0 0

Chromosomal Locations for CCDS 53641.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 61481810 61481918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61482311 61482428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61482655 61482808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61484688 61484816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61485338 61485401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61485799 61485911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61486524 61486610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61486948 61487061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61487146 61487240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61489782 61489946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 61490501 61490570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1218 nt):
ATGATGGGGAAACTCCCCCTGGGGGTCGTCTCCCCTTATGTGAAGATGAGTTCGGGGGGCTACACGGACC
CCCTGAAATTCTACGCCACCAGCTACTGCACCGCCTACGGTCGGGAGGATTTCAAGCCCCGTGTGGGCAG
TCACGTAGGCACCGGCTACAAATCAAATTTCCAGCCCGTGGTCTCATGCCAAGCCAGTCTGGAGGCCTTA
GACAACCCGGCCAGGGGGGAACAAGCCCAGGACCATTTCCAGTCTGTGGCCAGCCAGAGCTACCGCCCCC
TGGAGGTGCCTGACGGCAAGCATCCCCTGCCCTGGAGCATGCGCCAGACCAGCTCAGGCTATGGGCGGGA
GAAGCCCAGTGCGGGTCCCCCCACCAAGGAGGTCCGGAAGGTCCATTTCGACACCCAGGAGCACGGGCCT
CAGGCCATCACGGGGCTGGAGCCCAGGGAAGTGCCTCTGCTCCACCAGCAGCAGGGCCAGGACCCGCTGG
AGCGGGAGAACTTCCGACATGGCCCACGCTTCATGACGTCGGAGTACAATTCCAAGTATCTCAGGGACCC
TCTAGACCAGCCAGATTTCTTGCAGAAGAAATCGATCGGCGCAAAGGAGGGGAGTGGCTTCACCAAACAG
TCCCACCAGAGCCCCATTGTCTTCCAACCGCCCTCACAGGCCCTCCCTGGGGACCCTGGAGATGAGTTCC
TACCTGTGTTGGCCAGAGGCTCCAAGCGGGAAACAGCCTTCAGCCGAGGGAATGAAAGGATTCTGAACCC
CAGAGTGCCCCCTCCCTGCCCAGAACCCAGCAGCGTGAGTCACCAGCAGTTTCAGCCACTTCATCGGATG
CAACAGACAAACGTTGCCCTGCTTGGCCGGGAGACTGTGGGGAAAAAGGAGCCCACAGGGTTCAGCCTTA
ACAACCCCATGTATGTCCGGAGCCCCTGTGATCCTGACAGGGATCAGCGATACCTGACCACCTACAACCA
AGGGTACTTTGAGAACATCCCCAAGGGTCTAGACCAGGAAGGCTGGACTCGAGGTGGCATCCAGCCCCAG
ATGCCAGGAGGCTACGCCCTCAGCCAGCCGGTCAGCTGCATGGAGGCCACCCCCAACCCCATGGAGAGCC
TGCGGCACCTGCATCCCCACGTGGGAAGAACCCTGACCTCAGCTGACCCCTTCTACCAGAACACACCTCA
CAGCAGCCGCTGCGTGGCACACAGCTGA

Translation (405 aa):
MMGKLPLGVVSPYVKMSSGGYTDPLKFYATSYCTAYGREDFKPRVGSHVGTGYKSNFQPVVSCQASLEAL
DNPARGEQAQDHFQSVASQSYRPLEVPDGKHPLPWSMRQTSSGYGREKPSAGPPTKEVRKVHFDTQEHGP
QAITGLEPREVPLLHQQQGQDPLERENFRHGPRFMTSEYNSKYLRDPLDQPDFLQKKSIGAKEGSGFTKQ
SHQSPIVFQPPSQALPGDPGDEFLPVLARGSKRETAFSRGNERILNPRVPPPCPEPSSVSHQQFQPLHRM
QQTNVALLGRETVGKKEPTGFSLNNPMYVRSPCDPDRDQRYLTTYNQGYFENIPKGLDQEGWTRGGIQPQ
MPGGYALSQPVSCMEATPNPMESLRHLHPHVGRTLTSADPFYQNTPHSSRCVAHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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