NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8356.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8356.2 Public Homo sapiens 11 NKAPD1 24 110 108 CCDS HistoryNCBI Gene:55216Re-query CCDS DB by CCDS ID:8356.2Re-query CCDS DB by GeneID:55216See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 8356.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393047.8 ENSP00000376767.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393047.8Link to Ensembl Protein Viewer:ENSP00000376767.3Re-query CCDS DB by Nucleotide ID:ENST00000393047Re-query CCDS DB by Protein ID:ENSP00000376767
Original member Current member NCBI NM_001082969.2 NP_001076438.1 Accepted alive Link to Nucleotide Sequence:NM_001082969.2Link to Protein Sequence:NP_001076438.1Re-query CCDS DB by Nucleotide ID:NM_001082969Re-query CCDS DB by Protein ID:NP_001076438Link to BLAST:NP_001076438.1
Original member Current member NCBI NM_018195.4 NP_060665.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018195.4Link to Protein Sequence:NP_060665.3Re-query CCDS DB by Nucleotide ID:NM_018195Re-query CCDS DB by Protein ID:NP_060665Link to BLAST:NP_060665.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001076438.1 293 Q6ZUT1-2 293 100% 0 0
NP_060665.3 293 Q6ZUT1-2 293 100% 0 0

Chromosomal Locations for CCDS 8356.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 112075575 112075643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112078215 112078315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112080409 112080558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112081982 112082035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 112082465 112082972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (882 nt):
ATGTCCCGGATTCCACTGGGGAAGGTCCTCCTGAGGAATGTCATCCGGCACACAGATGCTCACAATAAGA
TTCAGGAGGAATCAGATATGTGGAAAATAAGAGAACTGGAAAAACAGATGGAAGATGCTTACCGGGGGAC
CAAAAGGAAAATGCTACCCAGCAGTTCAAGCCGGATGCGCAGTGATGGTTTTGATGAAGAAAGTCAAAGA
TACTATTGGAGGCCAAAGAATGAAATTTCTGGGACACTGGAAGATGATTTTCTTAAGGCTAAATCCTGGA
ATAAAAAGTTCTATGATTATGAAGCAAACATGCCAGACAGATGGGGTCACAGTGGTTATAAAGAGTTATA
CCCTGAAGAATTTGAAACAGACAGTAGTGATCAGCAAGATATTACCAACGGGAAGAAAACATCTCCCCAG
GTAAAGTCATCTACCCATGAATCCCGCAAACACAAGAAGTCAAAGAAATCCCACAAAAAAAAGCAGAAAA
AAAGGTCACACAAAAAACAGAAGAAAAGCAAAAAGGAAGCCACAGATATAACAGCAGATTCCTCGAGTGA
GTTCTCAGAAGAAACTGGGGCTTCTGGTACAAGGAAAGGGAAACAACCACATAAACGCAAGAAAAAATCC
AGGAAAAAGTCTCTCAAAAAACCTGCTTTATTCTTAGAGGCAGAAAGTAACACTTCACATTCAGATGATT
CAGCATCCAGCAGTTCTGAGGAAAGTGAGGAAAGAGACACTAAGAAAACCAAAAGGAAAAAGAGAGAGAA
AAAAGCCCATACCTCTGTAGCCAACAATGAAATACAGGAGAGGACAAACAAACGCACAAATTGGAAAGTA
GCTACAGATGAAAGGTCTGCTGAGAGCTCAGAGGATGACTAA

Translation (293 aa):
MSRIPLGKVLLRNVIRHTDAHNKIQEESDMWKIRELEKQMEDAYRGTKRKMLPSSSSRMRSDGFDEESQR
YYWRPKNEISGTLEDDFLKAKSWNKKFYDYEANMPDRWGHSGYKELYPEEFETDSSDQQDITNGKKTSPQ
VKSSTHESRKHKKSKKSHKKKQKKRSHKKQKKSKKEATDITADSSSEFSEETGASGTRKGKQPHKRKKKS
RKKSLKKPALFLEAESNTSHSDDSASSSSEESEERDTKKTKRKKREKKAHTSVANNEIQERTNKRTNWKV
ATDERSAESSEDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH