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Report for CCDS8575.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8575.1 Public Homo sapiens 12 CLSTN3 24 110 108 CCDS HistoryNCBI Gene:9746Re-query CCDS DB by CCDS ID:8575.1Re-query CCDS DB by GeneID:9746See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8575.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266546.11 ENSP00000266546.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266546.11Link to Ensembl Protein Viewer:ENSP00000266546.6Re-query CCDS DB by Nucleotide ID:ENST00000266546Re-query CCDS DB by Protein ID:ENSP00000266546
Original member Current member NCBI NM_014718.4 NP_055533.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014718.4Link to Protein Sequence:NP_055533.2Re-query CCDS DB by Nucleotide ID:NM_014718Re-query CCDS DB by Protein ID:NP_055533Link to BLAST:NP_055533.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055533.2 956 Q9BQT9-1 956 100% 0 0

Chromosomal Locations for CCDS 8575.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 7130649 7130712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7133024 7133146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7133573 7133768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7135327 7135535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7135804 7135953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7136206 7136391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7136829 7137110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7137955 7138067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7141242 7141404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7142086 7142139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7142869 7143026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7143163 7143311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7148972 7149198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7149523 7149693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7150544 7150689 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7150928 7151063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7157489 7157691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 7157941 7158081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2871 nt):
ATGACCCTCCTGCTGCTGCCCCTTCTGCTGGCCTCTCTGCTCGCGTCCTGCTCCTGTAACAAAGCCAACA
AGCACAAGCCATGGATTGAGGCAGAGTACCAGGGCATCGTCATGGAGAATGACAACACGGTCCTACTGAA
TCCACCACTCTTTGCCTTGGACAAGGATGCCCCGCTGCGCTATGCAGGTGAGATCTGCGGCTTCCGGCTC
CATGGGTCTGGGGTGCCCTTTGAGGCTGTGATCCTTGACAAGGCGACAGGAGAGGGGCTGATCCGGGCCA
AGGAGCCTGTGGACTGCGAGGCCCAGAAGGAACACACCTTCACCATCCAGGCCTATGACTGTGGCGAGGG
CCCCGACGGGGCCAACACCAAGAAGTCCCACAAGGCCACTGTGCATGTGCGGGTCAACGATGTGAACGAG
TTTGCCCCAGTGTTTGTGGAACGGCTGTATCGTGCGGCTGTGACAGAGGGGAAGCTGTACGATCGCATCC
TGCGGGTGGAAGCCATTGACGGTGACTGCTCCCCCCAGTACAGCCAGATCTGCTACTATGAGATTCTCAC
ACCCAACACCCCTTTCCTCATTGACAATGACGGGAACATTGAGAACACAGAGAAGCTGCAGTACAGTGGT
GAGAGGCTCTATAAGTTTACAGTGACAGCTTATGACTGTGGGAAGAAGCGGGCAGCAGATGATGCTGAGG
TGGAGATTCAGGTGAAGCCCACCTGTAAACCCAGCTGGCAAGGCTGGAACAAAAGGATCGAATATGCACC
AGGTGCTGGGAGCTTGGCTTTGTTCCCTGGTATCCGCCTGGAGACCTGTGATGAACCACTCTGGAACATT
CAGGCCACCATAGAGCTGCAGACCAGCCATGTGGCCAAGGGCTGTGACCGTGACAACTACTCAGAGCGGG
CGCTGCGGAAACTCTGTGGTGCTGCCACTGGGGAGGTGGATCTGTTGCCCATGCCTGGCCCCAATGCCAA
CTGGACAGCAGGACTCTCGGTGCACTACAGCCAGGACAGCAGCCTGATCTACTGGTTCAATGGCACCCAG
GCTGTGCAGGTGCCCCTGGGTGGCCCCAGTGGGCTGGGCTCTGGGCCCCAGGACAGCCTCAGTGACCACT
TCACCCTGTCCTTCTGGATGAAGCATGGCGTAACTCCCAACAAGGGCAAGAAGGAAGAGGAAACCATCGT
ATGTAACACTGTCCAGAATGAGGACGGCTTCTCTCACTACTCGCTGACTGTCCACGGCTGTAGGATTGCC
TTCCTCTACTGGCCCCTGCTTGAGAGTGCCCGCCCAGTCAAGTTCCTCTGGAAGCTGGAGCAGGTCTGTG
ATGATGAGTGGCACCACTACGCTCTGAACCTCGAGTTCCCCACAGTCACACTCTATACCGACGGCATCTC
CTTCGACCCTGCCCTCATCCATGACAATGGCCTCATCCACCCACCCCGAAGGGAGCCTGCTCTCATGATT
GGGGCCTGCTGGACTGAGGAGAAGAACAAAGAGAAGGAAAAGGGAGACAACAGTACAGACACCACCCAAG
GAGACCCTTTGTCGATCCACCACTACTTCCATGGCTACCTGGCTGGTTTCAGCGTGCGCTCAGGTCGCCT
GGAGAGCCGCGAGGTCATCGAGTGCCTCTATGCATGTCGGGAGGGGCTGGACTATAGGGATTTCGAGAGC
CTGGGCAAAGGCATGAAGGTCCACGTGAACCCCTCACAGTCCCTGCTCACCCTGGAGGGGGATGATGTGG
AGACCTTCAACCATGCCCTGCAGCATGTGGCTTACATGAACACTCTGCGCTTTGCCACGCCCGGCGTCAG
GCCCCTGCGCCTCACCACTGCTGTCAAGTGCTTCAGCGAAGAGTCCTGCGTCTCCATCCCTGAAGTGGAG
GGCTACGTGGTCGTCCTTCAGCCTGACGCCCCCCAGATCCTGCTGAGTGGCACTGCTCATTTTGCCCGCC
CAGCTGTGGACTTTGAGGGAACCAACGGCGTCCCTTTGTTCCCTGATCTTCAAATCACCTGCTCCATTTC
TCACCAGGTGGAGGCCAAAAAGGATGAGAGTTGGCAGGGCACAGTGACAGACACACGCATGTCGGATGAG
ATTGTGCACAACCTGGATGGCTGTGAAATTTCTCTGGTGGGGGATGACCTGGATCCCGAGCGGGAAAGCC
TGCTCCTGGACACAACCTCTCTGCAGCAGCGGGGGCTGGAGCTCACCAACACATCTGCCTACCTCACTAT
TGCTGGGGTGGAGAGCATCACTGTGTATGAAGAGATCCTGAGGCAGGCTCGTTATCGGCTGCGACACGGA
GCTGCCCTCTACACCAGGAAGTTCCGGCTTTCCTGCTCGGAAATGAATGGCCGTTACTCCAGCAATGAAT
TCATCGTGGAGGTCAATGTCCTGCACAGCATGAACCGGGTTGCCCACCCCAGCCACGTGCTCAGCTCCCA
GCAGTTCCTGCACCGTGGTCACCAGCCCCCGCCTGAGATGGCTGGACACAGCCTAGCCAGCTCCCACAGA
AACTCCATGATACCCAGCGCCGCAACCCTCATCATTGTGGTGTGCGTGGGCTTCCTGGTGCTCATGGTCG
TCCTGGGCCTGGTGCGCATCCATTCCCTTCACCGCCGCGTCTCAGGGGCCGGCGGGCCTCCAGGGGCCTC
CAGTGACCCCAAGGACCCAGACCTCTTCTGGGATGACTCAGCTCTCACCATCATTGTGAACCCCATGGAG
TCCTACCAGAATCGGCAGTCCTGTGTGACGGGGGCTGTTGGGGGCCAGCAGGAGGATGAGGACAGCAGTG
ACTCGGAGGTGGCCGATTCCCCCAGCAGCGACGAGAGACGCATCATCGAGACCCCCCCACACCGCTACTA
A

Translation (956 aa):
MTLLLLPLLLASLLASCSCNKANKHKPWIEAEYQGIVMENDNTVLLNPPLFALDKDAPLRYAGEICGFRL
HGSGVPFEAVILDKATGEGLIRAKEPVDCEAQKEHTFTIQAYDCGEGPDGANTKKSHKATVHVRVNDVNE
FAPVFVERLYRAAVTEGKLYDRILRVEAIDGDCSPQYSQICYYEILTPNTPFLIDNDGNIENTEKLQYSG
ERLYKFTVTAYDCGKKRAADDAEVEIQVKPTCKPSWQGWNKRIEYAPGAGSLALFPGIRLETCDEPLWNI
QATIELQTSHVAKGCDRDNYSERALRKLCGAATGEVDLLPMPGPNANWTAGLSVHYSQDSSLIYWFNGTQ
AVQVPLGGPSGLGSGPQDSLSDHFTLSFWMKHGVTPNKGKKEEETIVCNTVQNEDGFSHYSLTVHGCRIA
FLYWPLLESARPVKFLWKLEQVCDDEWHHYALNLEFPTVTLYTDGISFDPALIHDNGLIHPPRREPALMI
GACWTEEKNKEKEKGDNSTDTTQGDPLSIHHYFHGYLAGFSVRSGRLESREVIECLYACREGLDYRDFES
LGKGMKVHVNPSQSLLTLEGDDVETFNHALQHVAYMNTLRFATPGVRPLRLTTAVKCFSEESCVSIPEVE
GYVVVLQPDAPQILLSGTAHFARPAVDFEGTNGVPLFPDLQITCSISHQVEAKKDESWQGTVTDTRMSDE
IVHNLDGCEISLVGDDLDPERESLLLDTTSLQQRGLELTNTSAYLTIAGVESITVYEEILRQARYRLRHG
AALYTRKFRLSCSEMNGRYSSNEFIVEVNVLHSMNRVAHPSHVLSSQQFLHRGHQPPPEMAGHSLASSHR
NSMIPSAATLIIVVCVGFLVLMVVLGLVRIHSLHRRVSGAGGPPGASSDPKDPDLFWDDSALTIIVNPME
SYQNRQSCVTGAVGGQQEDEDSSDSEVADSPSSDERRIIETPPHRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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