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Report for CCDS45029.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45029.1 Public Homo sapiens 13 CCDC169 24 110 108 CCDS HistoryNCBI Gene:728591Re-query CCDS DB by CCDS ID:45029.1Re-query CCDS DB by GeneID:728591See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45029.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000379862.6 ENSP00000369191.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000379862.6Link to Ensembl Protein Viewer:ENSP00000369191.2Re-query CCDS DB by Nucleotide ID:ENST00000379862Re-query CCDS DB by Protein ID:ENSP00000369191
Original member Current member EBI ENST00000510088.5 ENSP00000427495.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510088.5Link to Ensembl Protein Viewer:ENSP00000427495.1Re-query CCDS DB by Nucleotide ID:ENST00000510088Re-query CCDS DB by Protein ID:ENSP00000427495
Original member Current member NCBI NM_001144985.3 NP_001138457.1 Accepted alive Link to Nucleotide Sequence:NM_001144985.3Link to Protein Sequence:NP_001138457.1Re-query CCDS DB by Nucleotide ID:NM_001144985Re-query CCDS DB by Protein ID:NP_001138457Link to BLAST:NP_001138457.1
Original member Current member NCBI NM_001144986.3 NP_001138458.1 Accepted alive Link to Nucleotide Sequence:NM_001144986.3Link to Protein Sequence:NP_001138458.1Re-query CCDS DB by Nucleotide ID:NM_001144986Re-query CCDS DB by Protein ID:NP_001138458Link to BLAST:NP_001138458.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138457.1 112 A6NNP5-5 112 100% 0 0
NP_001138458.1 112 A6NNP5-5 112 100% 0 0

Chromosomal Locations for CCDS 45029.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 36231193 36231292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36248606 36248682 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36253803 36253856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36254045 36254143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 36283469 36283477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGCCAGTGGAATCCTTAAACACATTACTTAAACAGCTAGAAGAAGAAAAGAAGACTCTTGAAAGTCAAG
TGAAATACTATGCACTTAAACTGGAACAAGAATCAAAGGCTTACCAGAAGATCAACAATGAACGCCGTAC
ATACCTAGCTGAAATGTCTCAGGGTTCTGGTTTACATCAAGTTTCTAAAAGGCAACAGGTGGATCAACTG
CCTAGGATGCAAGAGAATCTAGTGAAAACTGGAAGATATAATCCAGCTAAGCAGAAGACAGTGAGTGCCA
AGAGAGGACCAGTAAAAAAGATTACAAGACCAAACCATCTTCCAGAACTCCATCCATGA

Translation (112 aa):
MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQVSKRQQVDQL
PRMQENLVKTGRYNPAKQKTVSAKRGPVKKITRPNHLPELHP


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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