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Report for CCDS73577.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
73577.1 Public Homo sapiens 13 VPS36 24 110 108 CCDS HistoryNCBI Gene:51028Re-query CCDS DB by CCDS ID:73577.1Re-query CCDS DB by GeneID:51028See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 73577.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000611132.4 ENSP00000484968.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000611132.4Link to Ensembl Protein Viewer:ENSP00000484968.1Re-query CCDS DB by Nucleotide ID:ENST00000611132Re-query CCDS DB by Protein ID:ENSP00000484968
Original member Current member NCBI NM_001282169.2 NP_001269098.1 Accepted alive Link to Nucleotide Sequence:NM_001282169.2Link to Protein Sequence:NP_001269098.1Re-query CCDS DB by Nucleotide ID:NM_001282169Re-query CCDS DB by Protein ID:NP_001269098Link to BLAST:NP_001269098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269098.1 328 Q86VN1-2 328 100% 0 0

Chromosomal Locations for CCDS 73577.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 52415830 52415923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52416017 52416093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52417057 52417141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52417992 52418056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52423574 52423639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52425932 52426066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52426989 52427066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52427187 52427219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52433662 52433748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52434793 52434882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52436290 52436404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 52439098 52439159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (987 nt):
ATGGCCATTCTCCTTTCCCAAATTGTGTTCATTGAAGAACAGGCGGCTGGAATTGGGAAGAGTGCCAAAA
TAGTGGTTCATCTTCACCCAGCTCCTCCTAACAAAGAACCTGGCCCATTCCAGAGTAGTAAGAACTCCTA
CATCAAACTCTCCTTCAAAGAACATGGCCAGATTGAGTTTTACAGGCGTTTATCAGAGGAAATGACACAA
AGAAGATGGGAGAATATGCCAGTTTCCCAGTCATTACAAACAAATAGAGGACCCCAGCCAGGAAGAATAA
GGGCTGTAGGAATTGTAGGTATTGAAAGGAAACTGGAAGAAAAAAGAAAAGAAACTGACAAAAACATTTC
TGAGGCCTTTGAAGACCTCAGCAAACTAATGATCAAGGCTAAGGAAATGGTGGAATTATCAAAATCAATT
GCTAATAAAATTAAAGACAAACAAGGTGACATCACAGAAGATGAGACCATCAGGTTTAAATCCTACTTGC
TGAGCATGGGAATAGCTAACCCAGTTACCAGAGAAACCTACGGCTCAGGCACACAGTACCACATGCAGCT
GGCCAAACAACTGGCTGGAATATTGCAGGTGCCTTTAGAGGAACGAGGGGGAATAATGTCACTCACGGAG
GTGTACTGCTTAGTAAACCGAGCTCGAGGAATGGAATTGCTCTCACCAGAAGATTTAGTGAATGCGTGCA
AGATGCTGGAAGCACTGAAATTACCTCTCAGGCTCCGTGTGTTTGACAGTGGCGTCATGGTAATTGAGCT
TCAGTCTCACAAGGAAGAGGAAATGGTGGCCTCGGCCCTGGAGACAGTTTCAGAAAAGGGATCCCTAACA
TCAGAAGAGTTTGCTAAGCTTGTGGGAATGTCTGTCCTCCTAGCCAAAGAAAGGTTGCTGCTTGCAGAGA
AGATGGGCCATCTTTGCCGTGATGACTCAGTGGAAGGCCTGCGTTTTTACCCAAATTTATTTATGACACA
GAGCTAA

Translation (328 aa):
MAILLSQIVFIEEQAAGIGKSAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSEEMTQ
RRWENMPVSQSLQTNRGPQPGRIRAVGIVGIERKLEEKRKETDKNISEAFEDLSKLMIKAKEMVELSKSI
ANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETYGSGTQYHMQLAKQLAGILQVPLEERGGIMSLTE
VYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGSLT
SEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRFYPNLFMTQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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