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Report for CCDS61438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
61438.1 Public Homo sapiens 14 PSMA6 24 110 108 CCDS HistoryNCBI Gene:5687Re-query CCDS DB by CCDS ID:61438.1Re-query CCDS DB by GeneID:5687See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 61438.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000555764.5 ENSP00000452566.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555764.5Link to Ensembl Protein Viewer:ENSP00000452566.1Re-query CCDS DB by Nucleotide ID:ENST00000555764Re-query CCDS DB by Protein ID:ENSP00000452566
Original member Current member EBI ENST00000622405.4 ENSP00000479620.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622405.4Link to Ensembl Protein Viewer:ENSP00000479620.1Re-query CCDS DB by Nucleotide ID:ENST00000622405Re-query CCDS DB by Protein ID:ENSP00000479620
Original member Current member NCBI NM_001282232.1 NP_001269161.1 Accepted alive Link to Nucleotide Sequence:NM_001282232.1Link to Protein Sequence:NP_001269161.1Re-query CCDS DB by Nucleotide ID:NM_001282232Re-query CCDS DB by Protein ID:NP_001269161Link to BLAST:NP_001269161.1
Original member Current member NCBI NM_001282233.1 NP_001269162.1 Accepted alive Link to Nucleotide Sequence:NM_001282233.1Link to Protein Sequence:NP_001269162.1Re-query CCDS DB by Nucleotide ID:NM_001282233Re-query CCDS DB by Protein ID:NP_001269162Link to BLAST:NP_001269162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269161.1 167 P60900-3 167 100% 0 0
NP_001269162.1 167 P60900-3 167 100% 0 0

Chromosomal Locations for CCDS 61438.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 35308980 35308995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35310740 35310895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35312881 35313059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35314361 35314455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 35317249 35317306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (504 nt):
ATGACCGGAATGACAGCTGACAGCAGATCCCAGGTACAGAGGGCACGCTATGAGGCAGCTAACTGGAAAT
ACAAGTATGGCTATGAGATTCCTGTGGACATGCTGTGTAAAAGAATTGCCGATATTTCTCAGGTCTACAC
ACAGAATGCTGAAATGAGGCCTCTTGGTTGTTGTATGATTTTAATTGGTATAGATGAAGAGCAAGGCCCT
CAGGTATATAAGTGTGATCCTGCAGGTTACTACTGTGGGTTTAAAGCCACTGCAGCGGGAGTTAAACAAA
CTGAGTCAACCAGCTTCCTTGAAAAAAAAGTGAAGAAGAAATTTGATTGGACATTTGAACAGACAGTGGA
AACTGCAATTACATGCCTGTCTACTGTTCTATCAATTGATTTCAAACCTTCAGAAATAGAAGTTGGAGTA
GTGACAGTTGAAAATCCTAAATTCAGGATTCTTACAGAAGCAGAGATTGATGCTCACCTTGTTGCTCTAG
CAGAGAGAGACTAA

Translation (167 aa):
MTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGP
QVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSEIEVGV
VTVENPKFRILTEAEIDAHLVALAERD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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