CCDS Report for Consensus CDS

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Report for CCDS86430.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
86430.1	Public	Homo sapiens	14	SYNE3	24	110	108

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86430.1

Original	Current	Source	Nucleotide ID	Protein ID	MANE	Status in CCDS	Seq. Status	Links
		EBI	ENST00000557275.5	ENSP00000450562.1		Accepted	alive
		NCBI	NM_001363692.2	NP_001350621.1		Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_001350621.1	970	Q6ZMZ3-2	970	100%	0	0

Chromosomal Locations for CCDS 86430.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)

Genome Browser links:

Chromosome	Start	Stop
14	95417826	95418026
14	95432079	95432117
14	95433260	95433409
14	95436820	95436966
14	95439033	95439162
14	95439612	95439784
14	95439914	95440075
14	95443155	95443289
14	95444485	95444628
14	95445909	95446091
14	95449931	95450105
14	95452247	95452383
14	95455377	95455724
14	95457177	95457338
14	95465931	95466240
14	95467795	95467967
14	95475678	95475821

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2913 nt):
ATGACTCAGCAGCCCCAGGACGACTTTGACAGGAGCGTGGAGGATGCCCAGGCATGGATGAAGGCTGTGC AGGACCAGCTGCAGGTCAATGACAACACGCAGGGACCCCGCGCGGCCCTGGAGGCCAGGCTGTGGGAGAC CGAGAAAATATGCCAGCTGGAGCCCGAGGGGCGTGTGAGGGTGGACCTCGTGCTACGGATGGCTGAAGCC CTCTTGGCATGCTGCCCTGGGGACCAGAAGCCCGGGATCCTGGCCCGGCTGAAGGACATCAAGGCCCAAT GGGAGGAGACAGTCACCTACATGACTCACTGTCACAGCCGCATCGAGTGGGTGTGGCTGCACTGGAGCGA GTACCTGCTGGCCCGAGATGAGTTCTACCGCTGGTTCCAGAAGATGATGGTCACACTGGAGCCCCACATC GAGCTCCAGCTGGGCCTGAAGGAGAAGCAGTGGCAGCTGAGCCACGCCCAGGTGCTGCTGCACAACGTGG ACAACCAGGCGGTGCTCCTGGACCGGCTGCTGGAGGAGGCAGCCTCCCTGTTCAACAGGATCGGGGACCC CAGCGTGGACGAAGATGCCCAGAAGAGAATGAAGGCTGAGTACGATGCAGTGAAGGCCAAGGCCCAGAAG CGTGTAGATCTGCTGGAGCAGGTGGCCCGGGAGCATGAGGAGTACCAGGCAGGTGTGGACGAGTTCCAAC TGTGGCTGAAGGCGGTGGTGGAGAAGGTGAATGGCTGCCTGGGGCGGAACTGCAAGCTGCCCATCACGCA GCGCCTCTCCACACTGCAGGACATTGCCAAAGATTTTCCCAGGGGCGAGGAGTCTCTGGAGACGCTGGAG GAGCAGTCTGCGGGTGTCATTCGGAACACCTCTCCTTTGGGTGCAGAGAAGATCACCGGAGAACTGGAAG AGATGAGGAAAGTTCTGGAGAAGCTGCGCGCCCTCTGGGAGGAGGAGGAGGAGCGGCTGCGGGGCCTGCT CCGGTCCAGGGGAGCCTGGGAGCAGCAGATTAAGCAGCTGGAGGCTGAGCTCAGTGAGTTCAGGATGGTC CTGCAGAGGCTGGCCCAGGAGGGCCTGCAGCCTGCGGCGAAAGCGGGGACCGAGGACGAGCTGGTGGCAC ACTGGAGACGCTACTCGGCAACACGGGCGGCGCTGGCCTCGGAGGAGCCCCGGGTGGACCGGCTGCAAGC CCAGCTGAAGGAGCTCATCGTCTTCCCTCACAACCTGAAGCCACTCTCTGATAGTGTCATCGCTACCATC CAGGAGTATCAGAGCCTGAAGGTGAAGAGCGCGAGGCTGCGCAATGCCGCGGCGGTGGAGCTGTGGCAGC ATTTCCAGCGGCCTCTGCAGGATCTGCAGCTGTGGAAGGCCCTGGCCCAGCGGCTCTTGGAGGTCACTGC CAGCCTGCCGGACCTGCCTTCCCTTCACACCTTCCTGCCCCAGATCGAGGCAGCCCTGATGGAAAGCTCC CGCCTGAAAGAGCTGCTGACGATGCTGCAGCTGAAGAAAGACCTCCTGATTGGCATCTTTGGCCAGGAGA GAGCCACGGCACTCCTGGAGCAGGTGGCAGGTTCCATGAGGGACAGAGACCTGCTGCATAACAGCCTCCT GCAGAGGAAAAGCAAACTGCAGAGCCTGCTCGCTCAGCACAAAGACTTTGGAGCAGCTTTTGAGCCCCTG CAGAGGAAGCTCTTGGACCTCCAGGTCAGGGTCCAAGCCGAGAAGGGGCTTCAGCGGGACCTTCCTGGAA AACAGGCCCAGCTCTCAAGGTTGCAGGGGCTGCAGGAAGAGGGGCTGGACTTGGGGGCACAGATGGAGGC TGCAAGGCCTCTGGTCCAGGAGAACCCCAACCACCAGCACAAAATGGACCAGCTTTCCTCCGACTTCCAG GCCCTGCAGAGGTCTCTGGAGGACCTTGTGGACAGGTGTCGGCAGAGTGTGCAGGAGCACTGCACCTTCA GCCACCAGCTGCTGGAGCTGCGGCAGTGGATCGTTGTGACCACGCAAAAGCTGGAGGCACACCGGGGAGA GGCGGGCCCGGGGGATGCCGAGTCCCAAGAGGCCGAGTTTGAGAGGCTGGTGGCAGAATTCCCGGAGAAG GAGGCCCAGCTGTCCCTGGTGGAAGCGCAGGGCTGGCTGGTGATGGAGAAGTCTTCTCCGGAGGGTGCTG CCGTGGTGCAGGAGGAGCTCAGGGAGCTGGCAGAGTCGTGGCGGGCCTTGAGGCTGCTGGAAGAAAGTCT GCTGAGCCTCATCAGAAACTGGCATCTGCAGAGGATGGAAGTGGATTCGGGGAAGAAAATGGTTTTCACC AACAACATCCCAAAGTCAGGATTTCTCATCAATCCCATGGATCCTATTCCCAGGCATCGTCGACGCGAAG AAGAAGGGAGCCATGAAGATTTCTCCCAGCTCCTGAGGAACTTTGGGCAGTGGTTGCAGGTGGAAAACTC CAAGCTGGTTAGAATCATCGCAATGAGAACTTCTACAGCTGAGGACTTGAGGACCAGAAAATCGAAGCTG CAGGAGCTGGAGGCTCGGGTGCCAGAAGGTCAGCATCTCTTTGAGAACCTCCTTCGTCTCGGGCCAGCAA GGGGGACCTCGGATGAGCTGGAAGATCTGCGCTACCAGTGGATGCTGTACAAGTCCAAGCTGAAGGACTC TGGCCACCTGCTGACACAAAGTTCTCCAGGGGAGCCGACTGGATTCCAAAAGACTCGGCGGTGGCGAGGA CTGGGCTCCCTCTTCCGGAGGGCGTGCTGTGTGGCGCTCCCACTGCAGCTGCTTCTGCTGCTGTTCCTCC TCCTGCTGTTCCTGCTCCCAATCAGGGAAGAGGACCGCAGCTGCACCCTGGCCAACAACTTCGCCCGCTC CTTCACGCTCATGCTGCGCTACAATGGCCCACCACCCACCTAA
Translation (970 aa):
MTQQPQDDFDRSVEDAQAWMKAVQDQLQVNDNTQGPRAALEARLWETEKICQLEPEGRVRVDLVLRMAEA LLACCPGDQKPGILARLKDIKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMMVTLEPHI ELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAASLFNRIGDPSVDEDAQKRMKAEYDAVKAKAQK RVDLLEQVAREHEEYQAGVDEFQLWLKAVVEKVNGCLGRNCKLPITQRLSTLQDIAKDFPRGEESLETLE EQSAGVIRNTSPLGAEKITGELEEMRKVLEKLRALWEEEEERLRGLLRSRGAWEQQIKQLEAELSEFRMV LQRLAQEGLQPAAKAGTEDELVAHWRRYSATRAALASEEPRVDRLQAQLKELIVFPHNLKPLSDSVIATI QEYQSLKVKSARLRNAAAVELWQHFQRPLQDLQLWKALAQRLLEVTASLPDLPSLHTFLPQIEAALMESS RLKELLTMLQLKKDLLIGIFGQERATALLEQVAGSMRDRDLLHNSLLQRKSKLQSLLAQHKDFGAAFEPL QRKLLDLQVRVQAEKGLQRDLPGKQAQLSRLQGLQEEGLDLGAQMEAARPLVQENPNHQHKMDQLSSDFQ ALQRSLEDLVDRCRQSVQEHCTFSHQLLELRQWIVVTTQKLEAHRGEAGPGDAESQEAEFERLVAEFPEK EAQLSLVEAQGWLVMEKSSPEGAAVVQEELRELAESWRALRLLEESLLSLIRNWHLQRMEVDSGKKMVFT NNIPKSGFLINPMDPIPRHRRREEEGSHEDFSQLLRNFGQWLQVENSKLVRIIAMRTSTAEDLRTRKSKL QELEARVPEGQHLFENLLRLGPARGTSDELEDLRYQWMLYKSKLKDSGHLLTQSSPGEPTGFQKTRRWRG LGSLFRRACCVALPLQLLLLLFLLLLFLLPIREEDRSCTLANNFARSFTLMLRYNGPPPT

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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