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Report for CCDS9935.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9935.1 Public Homo sapiens 14 SYNE3 24 110 108 CCDS HistoryNCBI Gene:161176Re-query CCDS DB by CCDS ID:9935.1Re-query CCDS DB by GeneID:161176See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9935.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000334258.9 ENSP00000334308.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000334258.9Link to Ensembl Protein Viewer:ENSP00000334308.4Re-query CCDS DB by Nucleotide ID:ENST00000334258Re-query CCDS DB by Protein ID:ENSP00000334308
Original member Current member EBI ENST00000682763.1 ENSP00000507501.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682763.1Link to Ensembl Protein Viewer:ENSP00000507501.1Re-query CCDS DB by Nucleotide ID:ENST00000682763Re-query CCDS DB by Protein ID:ENSP00000507501
Original member Current member NCBI NM_152592.6 NP_689805.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152592.6Link to Protein Sequence:NP_689805.3Re-query CCDS DB by Nucleotide ID:NM_152592Re-query CCDS DB by Protein ID:NP_689805Link to BLAST:NP_689805.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689805.3 975 Q6ZMZ3-1 975 100% 0 0

Chromosomal Locations for CCDS 9935.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 95417826 95418026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95432079 95432117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95433260 95433409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95436820 95436981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95439033 95439162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95439612 95439784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95439914 95440075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95443155 95443289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95444485 95444628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95445909 95446091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95449931 95450105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95452247 95452383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95455377 95455724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95457177 95457338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95465931 95466240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95467795 95467967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 95475678 95475821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2928 nt):
ATGACTCAGCAGCCCCAGGACGACTTTGACAGGAGCGTGGAGGATGCCCAGGCATGGATGAAGGCTGTGC
AGGACCAGCTGCAGGTCAATGACAACACGCAGGGACCCCGCGCGGCCCTGGAGGCCAGGCTGTGGGAGAC
CGAGAAAATATGCCAGCTGGAGCCCGAGGGGCGTGTGAGGGTGGACCTCGTGCTACGGATGGCTGAAGCC
CTCTTGGCATGCTGCCCTGGGGACCAGAAGCCCGGGATCCTGGCCCGGCTGAAGGACATCAAGGCCCAAT
GGGAGGAGACAGTCACCTACATGACTCACTGTCACAGCCGCATCGAGTGGGTGTGGCTGCACTGGAGCGA
GTACCTGCTGGCCCGAGATGAGTTCTACCGCTGGTTCCAGAAGATGATGGTCACACTGGAGCCCCACATC
GAGCTCCAGCTGGGCCTGAAGGAGAAGCAGTGGCAGCTGAGCCACGCCCAGGTGCTGCTGCACAACGTGG
ACAACCAGGCGGTGCTCCTGGACCGGCTGCTGGAGGAGGCAGCCTCCCTGTTCAACAGGATCGGGGACCC
CAGCGTGGACGAAGATGCCCAGAAGAGAATGAAGGCTGAGTACGATGCAGTGAAGGCCAAGGCCCAGAAG
CGTGTAGATCTGCTGGAGCAGGTGGCCCGGGAGCATGAGGAGTACCAGGCAGGTGTGGACGAGTTCCAAC
TGTGGCTGAAGGCGGTGGTGGAGAAGGTGAATGGCTGCCTGGGGCGGAACTGCAAGCTGCCCATCACGCA
GCGCCTCTCCACACTGCAGGACATTGCCAAAGATTTTCCCAGGGGCGAGGAGTCTCTGGAGACGCTGGAG
GAGCAGTCTGCGGGTGTCATTCGGAACACCTCTCCTTTGGGTGCAGAGAAGATCACCGGAGAACTGGAAG
AGATGAGGAAAGTTCTGGAGAAGCTGCGCGCCCTCTGGGAGGAGGAGGAGGAGCGGCTGCGGGGCCTGCT
CCGGTCCAGGGGAGCCTGGGAGCAGCAGATTAAGCAGCTGGAGGCTGAGCTCAGTGAGTTCAGGATGGTC
CTGCAGAGGCTGGCCCAGGAGGGCCTGCAGCCTGCGGCGAAAGCGGGGACCGAGGACGAGCTGGTGGCAC
ACTGGAGACGCTACTCGGCAACACGGGCGGCGCTGGCCTCGGAGGAGCCCCGGGTGGACCGGCTGCAAGC
CCAGCTGAAGGAGCTCATCGTCTTCCCTCACAACCTGAAGCCACTCTCTGATAGTGTCATCGCTACCATC
CAGGAGTATCAGAGCCTGAAGGTGAAGAGCGCGAGGCTGCGCAATGCCGCGGCGGTGGAGCTGTGGCAGC
ATTTCCAGCGGCCTCTGCAGGATCTGCAGCTGTGGAAGGCCCTGGCCCAGCGGCTCTTGGAGGTCACTGC
CAGCCTGCCGGACCTGCCTTCCCTTCACACCTTCCTGCCCCAGATCGAGGCAGCCCTGATGGAAAGCTCC
CGCCTGAAAGAGCTGCTGACGATGCTGCAGCTGAAGAAAGACCTCCTGATTGGCATCTTTGGCCAGGAGA
GAGCCACGGCACTCCTGGAGCAGGTGGCAGGTTCCATGAGGGACAGAGACCTGCTGCATAACAGCCTCCT
GCAGAGGAAAAGCAAACTGCAGAGCCTGCTCGCTCAGCACAAAGACTTTGGAGCAGCTTTTGAGCCCCTG
CAGAGGAAGCTCTTGGACCTCCAGGTCAGGGTCCAAGCCGAGAAGGGGCTTCAGCGGGACCTTCCTGGAA
AACAGGCCCAGCTCTCAAGGTTGCAGGGGCTGCAGGAAGAGGGGCTGGACTTGGGGGCACAGATGGAGGC
TGCAAGGCCTCTGGTCCAGGAGAACCCCAACCACCAGCACAAAATGGACCAGCTTTCCTCCGACTTCCAG
GCCCTGCAGAGGTCTCTGGAGGACCTTGTGGACAGGTGTCGGCAGAGTGTGCAGGAGCACTGCACCTTCA
GCCACCAGCTGCTGGAGCTGCGGCAGTGGATCGTTGTGACCACGCAAAAGCTGGAGGCACACCGGGGAGA
GGCGGGCCCGGGGGATGCCGAGTCCCAAGAGGCCGAGTTTGAGAGGCTGGTGGCAGAATTCCCGGAGAAG
GAGGCCCAGCTGTCCCTGGTGGAAGCGCAGGGCTGGCTGGTGATGGAGAAGTCTTCTCCGGAGGGTGCTG
CCGTGGTGCAGGAGGAGCTCAGGGAGCTGGCAGAGTCGTGGCGGGCCTTGAGGCTGCTGGAAGAAAGTCT
GCTGAGCCTCATCAGAAACTGGCATCTGCAGAGGATGGAAGTGGATTCGGGGAAGAAAATGGTTTTCACC
AACAACATCCCAAAGTCAGGATTTCTCATCAATCCCATGGATCCTATTCCCAGGCATCGTCGACGCGCAA
ATCTTCTACAGGAAGAAGAAGGGAGCCATGAAGATTTCTCCCAGCTCCTGAGGAACTTTGGGCAGTGGTT
GCAGGTGGAAAACTCCAAGCTGGTTAGAATCATCGCAATGAGAACTTCTACAGCTGAGGACTTGAGGACC
AGAAAATCGAAGCTGCAGGAGCTGGAGGCTCGGGTGCCAGAAGGTCAGCATCTCTTTGAGAACCTCCTTC
GTCTCGGGCCAGCAAGGGGGACCTCGGATGAGCTGGAAGATCTGCGCTACCAGTGGATGCTGTACAAGTC
CAAGCTGAAGGACTCTGGCCACCTGCTGACACAAAGTTCTCCAGGGGAGCCGACTGGATTCCAAAAGACT
CGGCGGTGGCGAGGACTGGGCTCCCTCTTCCGGAGGGCGTGCTGTGTGGCGCTCCCACTGCAGCTGCTTC
TGCTGCTGTTCCTCCTCCTGCTGTTCCTGCTCCCAATCAGGGAAGAGGACCGCAGCTGCACCCTGGCCAA
CAACTTCGCCCGCTCCTTCACGCTCATGCTGCGCTACAATGGCCCACCACCCACCTAA

Translation (975 aa):
MTQQPQDDFDRSVEDAQAWMKAVQDQLQVNDNTQGPRAALEARLWETEKICQLEPEGRVRVDLVLRMAEA
LLACCPGDQKPGILARLKDIKAQWEETVTYMTHCHSRIEWVWLHWSEYLLARDEFYRWFQKMMVTLEPHI
ELQLGLKEKQWQLSHAQVLLHNVDNQAVLLDRLLEEAASLFNRIGDPSVDEDAQKRMKAEYDAVKAKAQK
RVDLLEQVAREHEEYQAGVDEFQLWLKAVVEKVNGCLGRNCKLPITQRLSTLQDIAKDFPRGEESLETLE
EQSAGVIRNTSPLGAEKITGELEEMRKVLEKLRALWEEEEERLRGLLRSRGAWEQQIKQLEAELSEFRMV
LQRLAQEGLQPAAKAGTEDELVAHWRRYSATRAALASEEPRVDRLQAQLKELIVFPHNLKPLSDSVIATI
QEYQSLKVKSARLRNAAAVELWQHFQRPLQDLQLWKALAQRLLEVTASLPDLPSLHTFLPQIEAALMESS
RLKELLTMLQLKKDLLIGIFGQERATALLEQVAGSMRDRDLLHNSLLQRKSKLQSLLAQHKDFGAAFEPL
QRKLLDLQVRVQAEKGLQRDLPGKQAQLSRLQGLQEEGLDLGAQMEAARPLVQENPNHQHKMDQLSSDFQ
ALQRSLEDLVDRCRQSVQEHCTFSHQLLELRQWIVVTTQKLEAHRGEAGPGDAESQEAEFERLVAEFPEK
EAQLSLVEAQGWLVMEKSSPEGAAVVQEELRELAESWRALRLLEESLLSLIRNWHLQRMEVDSGKKMVFT
NNIPKSGFLINPMDPIPRHRRRANLLQEEEGSHEDFSQLLRNFGQWLQVENSKLVRIIAMRTSTAEDLRT
RKSKLQELEARVPEGQHLFENLLRLGPARGTSDELEDLRYQWMLYKSKLKDSGHLLTQSSPGEPTGFQKT
RRWRGLGSLFRRACCVALPLQLLLLLFLLLLFLLPIREEDRSCTLANNFARSFTLMLRYNGPPPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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