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Report for CCDS45174.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45174.1 Public Homo sapiens 14 ZBTB42 24 110 108 CCDS HistoryNCBI Gene:100128927Re-query CCDS DB by CCDS ID:45174.1Re-query CCDS DB by GeneID:100128927See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45174.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000342537.8 ENSP00000409107.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000342537.8Link to Ensembl Protein Viewer:ENSP00000409107.2Re-query CCDS DB by Nucleotide ID:ENST00000342537Re-query CCDS DB by Protein ID:ENSP00000409107
Original member Current member EBI ENST00000555360.1 ENSP00000450673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555360.1Link to Ensembl Protein Viewer:ENSP00000450673.1Re-query CCDS DB by Nucleotide ID:ENST00000555360Re-query CCDS DB by Protein ID:ENSP00000450673
Original member Current member NCBI NM_001137601.3 NP_001131073.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001137601.3Link to Protein Sequence:NP_001131073.1Re-query CCDS DB by Nucleotide ID:NM_001137601Re-query CCDS DB by Protein ID:NP_001131073Link to BLAST:NP_001131073.1
Original member Current member NCBI NM_001370342.1 NP_001357271.1 Accepted alive Link to Nucleotide Sequence:NM_001370342.1Link to Protein Sequence:NP_001357271.1Re-query CCDS DB by Nucleotide ID:NM_001370342Re-query CCDS DB by Protein ID:NP_001357271Link to BLAST:NP_001357271.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001131073.1 422 B2RXF5 422 100% 0 0
NP_001357271.1 422 B2RXF5 422 100% 0 0

Chromosomal Locations for CCDS 45174.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 104801198 104802466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1269 nt):
ATGGAGTTCCCTGAGCACGGCGGACGGCTGCTGGGCCGCCTGAGACAGCAGCGCGAGCTGGGCTTCCTAT
GCGACTGCACCGTGCTGGTGGGCGACGCGCGCTTCCCGGCCCACCGTGCCGTGCTGGCCGCGTGCAGCGT
CTACTTCCATCTCTTCTACAGGGACCGGCCCGCGGGCAGTCGCGACACGGTGCGGCTCAACGGCGACATC
GTCACGGCGCCCGCCTTCGGCCGCCTACTGGACTTCATGTACGAGGGCCGCCTGGACCTGCGCAGCCTGC
CTGTGGAGGACGTCCTGGCAGCCGCCAGCTACCTGCACATGTATGACATCGTCAAGGTCTGCAAGGGCAG
GCTCCAGGAGAAGGATCGAAGTCTGGACCCGGGGAACCCTGCCCCTGGGGCAGAACCTGCTCAGCCACCG
TGCCCCTGGCCTGTCTGGACCGCGGACCTCTGCCCAGCTGCCCGAAAGGCCAAGCTCCCCCCGTTTGGGG
TCAAGGCTGCCCTCCCTCCTCGAGCATCTGGGCCTCCTCCCTGCCAGGTCCCAGAAGAGTCAGACCAGGC
CCTGGACCTGTCGTTGAAGTCTGGCCCAAGGCAGGAGCGGGTCCACCCACCGTGCGTCCTCCAGACACCC
CTCTGCAGCCAGAGGCAGCCAGGGGCCCAGCCACTGGTGAAGGACGAACGGGACTCACTGTCCGAACAGG
AGGAGAGCAGCAGCTCTAGGAGCCCCCACAGTCCCCCGAAGCCACCTCCTGTTCCTGCAGCCAAGGGCCT
GGTGGTGGGCTTGCAGCCGCTGCCCCTCAGCGGAGAGGGCAGCCGGGAGCTGGAGCTTGGTGCAGGGCGA
CTGGCGAGTGAGGACGAGCTGGGGCCTGGTGGGCCCCTCTGCATCTGCCCGTTGTGCAGCAAGCTGTTTC
CCAGCTCCCACGTGCTGCAGCTGCACCTCAGTGCCCACTTCCGTGAGCGAGACAGCACCCGGGCCCGGCT
CTCACCCGACGGCGTGGCACCCACCTGCCCGCTCTGTGGGAAGACCTTCTCGTGCACATACACACTGAAG
AGGCACGAGCGGACACACTCGGGTGAGAAGCCCTATACGTGTGTGCAGTGTGGCAAAAGTTTTCAGTACT
CCCACAACCTGAGCCGGCACACCGTAGTGCACACTCGAGAGAAGCCGCATGCCTGCCGGTGGTGTGAGCG
CCGTTTCACGCAGTCCGGGGACCTCTACCGCCACGTCCGCAAGTTTCACTGTGGCCTCGTCAAGTCCCTT
CTGGTGTGA

Translation (422 aa):
MEFPEHGGRLLGRLRQQRELGFLCDCTVLVGDARFPAHRAVLAACSVYFHLFYRDRPAGSRDTVRLNGDI
VTAPAFGRLLDFMYEGRLDLRSLPVEDVLAAASYLHMYDIVKVCKGRLQEKDRSLDPGNPAPGAEPAQPP
CPWPVWTADLCPAARKAKLPPFGVKAALPPRASGPPPCQVPEESDQALDLSLKSGPRQERVHPPCVLQTP
LCSQRQPGAQPLVKDERDSLSEQEESSSSRSPHSPPKPPPVPAAKGLVVGLQPLPLSGEGSRELELGAGR
LASEDELGPGGPLCICPLCSKLFPSSHVLQLHLSAHFRERDSTRARLSPDGVAPTCPLCGKTFSCTYTLK
RHERTHSGEKPYTCVQCGKSFQYSHNLSRHTVVHTREKPHACRWCERRFTQSGDLYRHVRKFHCGLVKSL
LV


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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