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Report for CCDS42070.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42070.1 Public Homo sapiens 15 EFL1 24 110 108 CCDS HistoryNCBI Gene:79631Re-query CCDS DB by CCDS ID:42070.1Re-query CCDS DB by GeneID:79631See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42070.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359445.8 ENSP00000352418.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000359445.8Link to Ensembl Protein Viewer:ENSP00000352418.3Re-query CCDS DB by Nucleotide ID:ENST00000359445Re-query CCDS DB by Protein ID:ENSP00000352418
Original member Current member NCBI NM_001040610.3 NP_001035700.1 Accepted alive Link to Nucleotide Sequence:NM_001040610.3Link to Protein Sequence:NP_001035700.1Re-query CCDS DB by Nucleotide ID:NM_001040610Re-query CCDS DB by Protein ID:NP_001035700Link to BLAST:NP_001035700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035700.1 1069 Q7Z2Z2-2 1069 100% 0 0

Chromosomal Locations for CCDS 42070.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 82130373 82130561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82138658 82138842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82151465 82152423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82157713 82157860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82163853 82163984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82214717 82214855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82219652 82219818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82220078 82220229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82225165 82225264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82227450 82227572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82228191 82228327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82229034 82229110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82230848 82230971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82238307 82238521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82240418 82240555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82241270 82241403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 82261688 82261778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGGTGCTCAACAGTTTGGATAAGATGATTCAACTCCAGAAAAACACTGCCAACATCAGGAATATTTGTG
TTTTGGCTCATGTTGACCATGGTAATGAGGAGTACCTGATCAATCTGATAGACTCTCCAGGACACGTGGA
CTTTTCCTCAGAAGTATCAACCGCTGTTCGCATTTGTGATGGATGCATCATTGTGGTAGATGCTGTGGAA
GGAGTCTGTCCACAGACACAGGCAGTTCTGCGACAAGCTTGGCTTGAAAACATCCGTCCGGTTTTAGTGA
TTAATAAGATTGATCGCTTGATAGTGGAACTGAAATTCACCCCACAAGAGGCCTATTCTCACCTCAAGAA
TATTTTAGAACAGATTAATGCGCTCACAGGGACTCTTTTTACTTCTAAAGTCCTAGAAGAAAGAGCAGAG
AGGGAGACTGAATCCCAAGTGAATCCAAATTCTGAACAAGGAGAGCAAGTATATGACTGGAGCACTGGCT
TGGAGGACACAGATGATTCTCACCTTTACTTCTCTCCAGAACAGGGAAATGTGGTGTTTACCAGTGCAAT
AGATGGGTGGGGCTTTGGAATTGAGCACTTCGCCAGAATCTACAGTCAAAAAATTGGCATCAAAAAGGAA
GTTCTTATGAAAACCTTGTGGGGAGATTACTATATAAATATGAAGGCTAAAAAGATCATGAAGGGTGATC
AGGCCAAAGGAAAGAAACCTTTATTTGTACAGTTGATCCTGGAAAATATATGGAGTTTGTATGATGCTGT
TTTGAAAAAGGACAAAGACAAAATTGATAAAATAGTGACTTCTTTAGGATTAAAAATTGGAGCCCGGGAG
GCACGACATTCAGACCCTAAAGTTCAGATCAACGCCATTTGCAGTCAGTGGCTACCCATATCCCATGCTG
TTCTTGCTATGGTGTGTCAGAAACTTCCTAGTCCCCTTGATATTACAGCTGAGAGAGTGGAGAGACTGAT
GTGCACAGGATCACAAACTTTTGACTCTTTTCCACCAGAAACTCAAGCACTGAAAGCAGCTTTTATGAAA
TGTGGAAGTGAGGACACTGCTCCAGTTATTATATTTGTTTCCAAAATGTTTGCAGTTGATGCTAAGGCCT
TGCCTCAGAATAAGCCAAGGCCTCTCACTCAAGAAGAAATTGCTCAGAGACGTGAGCGTGCAAGACAAAG
GCATGCAGAGAAGCTTGCAGCAGCACAGGGACAGGCACCCTTGGAGCCCACCCAAGATGGGAGTGCCATT
GAAACATGTCCAAAAGGAGAGGAGCCAAGAGGTGACGAGCAACAGGTGGAAAGTATGACCCCTAAACCTG
TGCTCCAGGAAGAAAACAACCAAGAGTCTTTTATTGCATTTGCTCGGGTGTTCAGTGGTGTGGCTCGAAG
AGGAAAGAAAATTTTTGTCTTGGGGCCCAAATACAGTCCTCTTGAGTTTTTACGAAGGGTACCATTAGGC
TTCTCAGCTCCACCAGATGGCCTCCCCCAAGTCCCCCACATGGCATACTGTGCTCTGGAAAACCTGTATC
TTCTGATGGGAAGGGAACTGGAATATCTAGAGGAGGTACCTCCAGGAAATGTGCTAGGAATAGGAGGCCT
TCAAGATTTTGTGCTGAAATCTGCAACACTGTGTAGCCTGCCATCCTGCCCACCATTTATACCACTCAAC
TTCGAAGCCACTCCTATTGTGAGAGTTGCTGTTGAACCAAAACATCCAAGTGAAATGCCTCAGCTCGTAA
AAGGAATGAAACTGTTAAACCAGGCTGATCCCTGTGTCCAGATTTTAATTCAGGAAACGGGAGAGCACGT
TTTAGTCACAGCAGGAGAAGTCCACCTTCAGCGATGCCTGGATGACTTAAAAGAAAGGTTTGCAAAGATT
CATATCAGTGTATCTGAACCTATTATTCCATTCAGAGAAACAATCACAAAACCCCCAAAAGTTGACATGG
TCAATGAAGAAATAGGCAAACAGCAAAAAGTTGCAGTCATACACCAAATGAAAGAAGATCAAAGCAAAAT
CCCTGAAGGAATCCAAGTTGACTCTGACGGGCTAATCACCATAACAACTCCCAATAAACTTGCCACGCTC
AGTGTTCGAGCCATGCCCCTTCCAGAAGAAGTCACCCAGATTCTGGAAGAAAATAGTGATTTGATTCGTT
CTATGGAGCAGTTGACATCCTCTTTGAATGAGGGTGAAAATACTCACATGATTCATCAGAAGACCCAAGA
GAAAATTTGGGAATTCAAAGGAAAACTGGAGCAACACCTAACAGGGAGAAGATGGAGGAACATTGTTGAC
CAAATCTGGTCATTTGGCCCAAGAAAATGTGGGCCCAACATACTAGTCAATAAAAGTGAAGATTTTCAGA
ACTCAGTATGGACAGGTCCAGCTGACAAAGCTTCAAAAGAAGCCAGTAGATACCGAGATTTGGGCAATAG
CATTGTGAGTGGCTTCCAACTAGCAACCCTCTCTGGCCCCATGTGTGAGGAGCCTCTCATGGGTGTCTGT
TTTGTTCTGGAAAAATGGGACCTAAGTAAATTTGAGGAACAAGGAGCAAGTGATCTGGCAAAAGAGGGAC
AGGAGGAAAATGAAACCTGTTCTGGTGGAAATGAAAACCAAGAGCTACAAGATGGCTGCTCTGAGGCCTT
TGAGAAGAGGACATCACAGAAAGGAGAATCTCCACTCACTGACTGCTATGGACCTTTCTCAGGACAGCTA
ATTGCCACCATGAAAGAAGCATGTCGCTATGCACTGCAAGTGAAACCTCAGCGCCTGATGGCAGCTATGT
ACACATGTGACATCATGGCCACTGGTGATGTTCTCGGTCGAGTCTATGCTGTCTTGTCAAAGAGAGAAGG
TCGGGTACTTCAAGAAGAAATGAAAGAAGGGACAGACATGTTCATCATCAAGGCTGTGCTGCCTGTTGCT
GAAAGCTTTGGTTTTGCTGATGAAATCAGGAAGAGGACAAGTGGCCTGGCCAGCCCACAACTAGTATTCA
GCCATTGGGAGATCATTCCCAGTGACCCCTTCTGGGTGCCAACTACTGAGGAGGAATACTTGCACTTTGG
GGAGAAGGCTGACTCTGAGAACCAAGCCCGGAAGTACATGAACGCAGTACGAAAGCGGAAGGGGCTTTAT
GTGGAAGAAAAGATTGTGGAGCATGCAGAAAAGCAGAGGACACTCAGCAAAAATAAGTAG

Translation (1069 aa):
MVLNSLDKMIQLQKNTANIRNICVLAHVDHGNEEYLINLIDSPGHVDFSSEVSTAVRICDGCIIVVDAVE
GVCPQTQAVLRQAWLENIRPVLVINKIDRLIVELKFTPQEAYSHLKNILEQINALTGTLFTSKVLEERAE
RETESQVNPNSEQGEQVYDWSTGLEDTDDSHLYFSPEQGNVVFTSAIDGWGFGIEHFARIYSQKIGIKKE
VLMKTLWGDYYINMKAKKIMKGDQAKGKKPLFVQLILENIWSLYDAVLKKDKDKIDKIVTSLGLKIGARE
ARHSDPKVQINAICSQWLPISHAVLAMVCQKLPSPLDITAERVERLMCTGSQTFDSFPPETQALKAAFMK
CGSEDTAPVIIFVSKMFAVDAKALPQNKPRPLTQEEIAQRRERARQRHAEKLAAAQGQAPLEPTQDGSAI
ETCPKGEEPRGDEQQVESMTPKPVLQEENNQESFIAFARVFSGVARRGKKIFVLGPKYSPLEFLRRVPLG
FSAPPDGLPQVPHMAYCALENLYLLMGRELEYLEEVPPGNVLGIGGLQDFVLKSATLCSLPSCPPFIPLN
FEATPIVRVAVEPKHPSEMPQLVKGMKLLNQADPCVQILIQETGEHVLVTAGEVHLQRCLDDLKERFAKI
HISVSEPIIPFRETITKPPKVDMVNEEIGKQQKVAVIHQMKEDQSKIPEGIQVDSDGLITITTPNKLATL
SVRAMPLPEEVTQILEENSDLIRSMEQLTSSLNEGENTHMIHQKTQEKIWEFKGKLEQHLTGRRWRNIVD
QIWSFGPRKCGPNILVNKSEDFQNSVWTGPADKASKEASRYRDLGNSIVSGFQLATLSGPMCEEPLMGVC
FVLEKWDLSKFEEQGASDLAKEGQEENETCSGGNENQELQDGCSEAFEKRTSQKGESPLTDCYGPFSGQL
IATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVA
ESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGLY
VEEKIVEHAEKQRTLSKNK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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